Index

A

accept_amputation() (fullrmc.Constraints.AngleConstraints.BondsAngleConstraint method) (fullrmc.Constraints.AtomicCoordinationConstraints.AtomicCoordinationNumberConstraint method) (fullrmc.Constraints.BondConstraints.BondConstraint method) (fullrmc.Constraints.DihedralAngleConstraints.DihedralAngleConstraint method) (fullrmc.Constraints.DistanceConstraints.DistanceConstraint method) (fullrmc.Constraints.ImproperAngleConstraints.ImproperAngleConstraint method) (fullrmc.Constraints.PairDistributionConstraints.PairDistributionConstraint method) (fullrmc.Constraints.StructureFactorConstraints.StructureFactorConstraint method) (fullrmc.Core.Constraint.Constraint method) accept_insertion() (fullrmc.Core.Constraint.Constraint method) accept_move() (fullrmc.Constraints.AngleConstraints.BondsAngleConstraint method) (fullrmc.Constraints.AtomicCoordinationConstraints.AtomicCoordinationNumberConstraint method) (fullrmc.Constraints.BondConstraints.BondConstraint method) (fullrmc.Constraints.DihedralAngleConstraints.DihedralAngleConstraint method) (fullrmc.Constraints.DistanceConstraints.DistanceConstraint method) (fullrmc.Constraints.ImproperAngleConstraints.ImproperAngleConstraint method) (fullrmc.Constraints.PairDistributionConstraints.PairDistributionConstraint method) (fullrmc.Constraints.StructureFactorConstraints.StructureFactorConstraint method) (fullrmc.Core.Constraint.Constraint method) accepted (fullrmc.Core.Constraint.Constraint property) (fullrmc.Engine.Engine property) activeAtomsDataAfterMove (fullrmc.Core.Constraint.Constraint property) activeAtomsDataBeforeMove (fullrmc.Core.Constraint.Constraint property) add() (fullrmc.Globals.Evaluators method) add_constraints() (fullrmc.Engine.Engine method) add_frame() (fullrmc.Engine.Engine method) add_frames() (fullrmc.Engine.Engine method) add_group() (fullrmc.Engine.Engine method) add_listener() (fullrmc.Core.Collection.Broadcaster method) add_missing() (fullrmc.Engine.BackwardCompatibility class method) add_subframe() (fullrmc.Engine.Engine method) add_subframes() (fullrmc.Engine.Engine method) adjustMoveGenerators (fullrmc.Selectors.OrderedSelectors.DirectionalOrderSelector property) adjustScaleFactor (fullrmc.Core.Constraint.ExperimentalConstraint property) adjustScaleFactorLearningRate (fullrmc.Core.Constraint.ExperimentalConstraint property) adjustScaleFactorMaximum (fullrmc.Core.Constraint.ExperimentalConstraint property) adjustScaleFactorMinimum (fullrmc.Core.Constraint.ExperimentalConstraint property) adjustScaleFactorUpdate (fullrmc.Core.Constraint.ExperimentalConstraint property) afterMoveStandardError (fullrmc.Core.Constraint.Constraint property) agitate (fullrmc.Generators.Agitations.AngleAgitationGenerator property) (fullrmc.Generators.Agitations.DistanceAgitationGenerator property) all_atoms_coord_number_coords() (in module fullrmc.Core.atomic_coordination) all_atoms_coord_number_totdists() (in module fullrmc.Core.atomic_coordination) allChainIdentifiers (fullrmc.Engine.Engine property) allElements (fullrmc.Engine.Engine property) allEvaluators (fullrmc.Globals.Evaluators property) allNames (fullrmc.Engine.Engine property) allowFittingScaleFactor (fullrmc.Core.MoveGenerator.RemoveGenerator property) allResidues (fullrmc.Engine.Engine property) allSegments (fullrmc.Engine.Engine property) allSequences (fullrmc.Engine.Engine property) AmorphousNanoparticle (class in fullrmc.SystemBuilderUtils)

AmorphousSystem (class in fullrmc.SystemBuilderUtils) amplitude (fullrmc.Core.MoveGenerator.AmplitudeUtils property) (fullrmc.Generators.Agitations.AngleAgitationGenerator property) (fullrmc.Generators.Agitations.DistanceAgitationGenerator property) (fullrmc.Generators.Rotations.RotationGenerator property) (fullrmc.Generators.Rotations.RotationRandomGenerator property) (fullrmc.Generators.Translations.TranslationRandomGenerator property) (fullrmc.Generators.Volumes.VolumeGenerator property) amplitude_utils_parameters (fullrmc.Core.MoveGenerator.AmplitudeUtils property) AmplitudeUtils (class in fullrmc.Core.MoveGenerator) amputationData (fullrmc.Core.Constraint.Constraint property) amputationStandardError (fullrmc.Core.Constraint.Constraint property) angle (fullrmc.Core.MoveGenerator.AxisUtils property) (fullrmc.Generators.Translations.TranslationTowardsAxisGenerator property) (fullrmc.Generators.Translations.TranslationTowardsCenterGenerator property) (fullrmc.Generators.Translations.TranslationTowardsSymmetryAxisGenerator property) (fullrmc.Generators.Walks.WalkGenerator property) AngleAgitationGenerator (class in fullrmc.Generators.Agitations) angles (fullrmc.Constraints.AngleConstraints.BondsAngleConstraint property) (fullrmc.Constraints.DihedralAngleConstraints.DihedralAngleConstraint property) (fullrmc.Constraints.ImproperAngleConstraints.ImproperAngleConstraint property) anglesDefinition (fullrmc.Constraints.AngleConstraints.BondsAngleConstraint property) (fullrmc.Constraints.DihedralAngleConstraints.DihedralAngleConstraint property) (fullrmc.Constraints.ImproperAngleConstraints.ImproperAngleConstraint property) anglesList (fullrmc.Constraints.AngleConstraints.BondsAngleConstraint property) (fullrmc.Constraints.DihedralAngleConstraints.DihedralAngleConstraint property) (fullrmc.Constraints.ImproperAngleConstraints.ImproperAngleConstraint property) append_to_swap_list() (fullrmc.Core.MoveGenerator.SwapGenerator method) asCoreDefIdxs (fullrmc.Constraints.AtomicCoordinationConstraints.AtomicCoordinationNumberConstraint property) assert_singular() (fullrmc.Core.Constraint.SingularConstraint method) AtomicCoordinationNumberConstraint (class in fullrmc.Constraints.AtomicCoordinationConstraints) atoms_group_by() (in module fullrmc.Core.Collection) atomsList (fullrmc.Core.MoveGenerator.RemoveGenerator property) AtomsPairWeighting (class in fullrmc.Core.Constraint) AtomsRemoveGenerator (class in fullrmc.Generators.Removes) atomsTag (fullrmc.Constraints.DistanceConstraints.DistanceConstraint property) AtomsTransmutator (class in fullrmc.SystemBuilderUtils) atomsWeight (fullrmc.Core.Constraint.AtomsPairWeighting property) auto_adjusting_convolution() (in module fullrmc.Core.Collection) autofind_angles_in_molecules() (in module fullrmc.Core.Collection) autofind_bonds_in_molecules() (in module fullrmc.Core.Collection) autofix_molecules_atomic_inconsistencies() (fullrmc.Engine.Engine method) availableDFTs (fullrmc.Engine.Engine property) axis (fullrmc.Core.MoveGenerator.AxisUtils property) (fullrmc.Generators.Rotations.RotationAboutAxisGenerator property) (fullrmc.Generators.Rotations.RotationAboutSymmetryAxisGenerator property) (fullrmc.Generators.Rotations.RotationAboutSymmetryAxisPath property) (fullrmc.Generators.Translations.TranslationAlongAxisGenerator property) (fullrmc.Generators.Translations.TranslationAlongSymmetryAxisGenerator property) (fullrmc.Generators.Translations.TranslationAlongSymmetryAxisPath property) (fullrmc.Generators.Volumes.CylinderVolumeGenerator property) axis_utils_parameters (fullrmc.Core.MoveGenerator.AxisUtils property) AxisUtils (class in fullrmc.Core.MoveGenerator)

B

BackwardCompatibility (class in fullrmc.Engine) bandpass_filter() (in module fullrmc.Core.Collection) BaseAmorphousBuilder (class in fullrmc.SystemBuilderUtils) BaseCrystalBuilder (class in fullrmc.SystemBuilderUtils) basisVectors (fullrmc.Engine.Engine property) bias (fullrmc.Core.Collection.BiasedRandomFloatGenerator property) bias_scheme_at_position() (fullrmc.Core.Collection.BiasedRandomFloatGenerator method) (fullrmc.Core.Collection.BiasedRandomIntegerGenerator method) bias_scheme_by_index() (fullrmc.Core.Collection.BiasedRandomFloatGenerator method) (fullrmc.Core.Collection.BiasedRandomIntegerGenerator method) biasBins (fullrmc.Core.Collection.BiasedRandomFloatGenerator property) BiasedRandomFloatGenerator (class in fullrmc.Core.Collection) BiasedRandomIntegerGenerator (class in fullrmc.Core.Collection) biasFactor (fullrmc.Selectors.RandomSelectors.SmartRandomSelector property) biasFWHM (fullrmc.Core.Collection.BiasedRandomFloatGenerator property) biasFWHMBins (fullrmc.Core.Collection.BiasedRandomFloatGenerator property) biasGuassian (fullrmc.Core.Collection.BiasedRandomFloatGenerator property) biasRange (fullrmc.Core.Collection.BiasedRandomFloatGenerator property) bins (fullrmc.Core.Collection.BiasedRandomFloatGenerator property) (fullrmc.Core.Collection.BiasedRandomIntegerGenerator property) binWidth (fullrmc.Core.Collection.BiasedRandomFloatGenerator property) BondConstraint (class in fullrmc.Constraints.BondConstraints)

bonds (fullrmc.Constraints.BondConstraints.BondConstraint property) BondsAngleConstraint (class in fullrmc.Constraints.AngleConstraints) bondsDefinition (fullrmc.Constraints.BondConstraints.BondConstraint property) bondsList (fullrmc.Constraints.BondConstraints.BondConstraint property) bottom (fullrmc.Generators.Neighbours.TranslationTowardsNeighboursGenerator property) boundaryConditions (fullrmc.Engine.Engine property) (fullrmc.SystemBuilderUtils.AtomsTransmutator property) (fullrmc.SystemBuilderUtils.CrystalSupercell property) box_coordinates_real_distances() (in module fullrmc.Core.boundary_conditions_collection) boxCoordinates (fullrmc.Engine.Engine property) broadcast() (fullrmc.Core.Collection.Broadcaster method) Broadcaster (class in fullrmc.Core.Collection) build() (fullrmc.SystemBuilderUtils.AmorphousNanoparticle method) (fullrmc.SystemBuilderUtils.AmorphousSystem method) (fullrmc.SystemBuilderUtils.AtomsTransmutator method) (fullrmc.SystemBuilderUtils.BaseAmorphousBuilder method) (fullrmc.SystemBuilderUtils.CrystalNanoparticle method) (fullrmc.SystemBuilderUtils.CrystalSupercell method) (fullrmc.SystemBuilderUtils.NanoDomains method) build_crystal_set_pdb() (fullrmc.Engine.Engine method) build_engine_from_optimizer() (fullrmc.Engine.Engine method) build_engine_from_snapshot() (fullrmc.Engine.Engine class method) build_groups() (fullrmc.Engine.Engine method)

C

center (fullrmc.Generators.Translations.TranslationTowardsCenterGenerator property) (fullrmc.Generators.Volumes.VolumeGenerator property) (fullrmc.Selectors.OrderedSelectors.DirectionalOrderSelector property) CenteredSubsetGroup (class in fullrmc.Core.Group) ChainedAtomsOptimizerGenerator (class in fullrmc.OptimizationEngine) chainIdentifiers (fullrmc.Engine.Engine property) check_experimental_data() (fullrmc.Constraints.PairDistributionConstraints.PairDistributionConstraint method) (fullrmc.Constraints.StructureFactorConstraints.StructureFactorConstraint method) (fullrmc.Core.Constraint.ExperimentalConstraint method) check_group() (fullrmc.Core.MoveGenerator.MoveGenerator method) (fullrmc.Core.MoveGenerator.MoveGeneratorCollector method) (fullrmc.Core.MoveGenerator.MoveGeneratorCombinator method) (fullrmc.Core.MoveGenerator.RemoveGenerator method) (fullrmc.Generators.Agitations.AngleAgitationGenerator method) (fullrmc.Generators.Agitations.DistanceAgitationGenerator method) (fullrmc.Generators.Neighbours.NeighboursGeneratorBase method) (fullrmc.Generators.Rotations.OrientationGenerator method) (fullrmc.Generators.Rotations.RotationAboutAxisGenerator method) (fullrmc.Generators.Rotations.RotationAboutSymmetryAxisPath method) (fullrmc.Generators.Rotations.RotationGenerator method) (fullrmc.Generators.Rotations.RotationRandomGenerator method) (fullrmc.Generators.Swaps.SwapCentersGenerator method) (fullrmc.Generators.Swaps.SwapPositionsGenerator method) (fullrmc.Generators.Translations.TranslationAlongSymmetryAxisGenerator method) (fullrmc.Generators.Translations.TranslationAlongSymmetryAxisPath method) (fullrmc.Generators.Translations.TranslationGenerator method) (fullrmc.Generators.Translations.TranslationRandomGenerator method) (fullrmc.Generators.Volumes.VolumeGenerator method) (fullrmc.Generators.Walks.WalkGenerator method) check_molecules_inconsistencies() (fullrmc.Engine.Engine method) check_path() (fullrmc.Core.MoveGenerator.PathGenerator method) (fullrmc.Generators.Rotations.RotationAboutSymmetryAxisPath method) (fullrmc.Generators.Translations.TranslationAlongSymmetryAxisPath method) clear() (fullrmc.Engine.InterceptHook class method) clear_groups() (fullrmc.Engine.Engine method) clone() (fullrmc.Constraints.PairCorrelationConstraints.Grains_PairCorrelationConstraint class method) (fullrmc.Constraints.PairDistributionConstraints.Grains_PairDistributionConstraint class method) (fullrmc.Constraints.RadialDistributionConstraints.Grains_RadialDistributionConstraint class method) (fullrmc.Constraints.StructureFactorConstraints.Grains_StructureFactorConstraint class method) (fullrmc.Core.Constraint.Grains_Constraint class method) clone_frame() (fullrmc.Engine.Engine method) codify() (fullrmc.Engine.Engine method) collection (fullrmc.Core.MoveGenerator.MoveGeneratorCollector property) combination (fullrmc.Core.MoveGenerator.MoveGeneratorCombinator property) computationCost (fullrmc.Core.Constraint.Constraint property) compute_after_move() (fullrmc.Constraints.AngleConstraints.BondsAngleConstraint method) (fullrmc.Constraints.AtomicCoordinationConstraints.AtomicCoordinationNumberConstraint method) (fullrmc.Constraints.BondConstraints.BondConstraint method) (fullrmc.Constraints.DihedralAngleConstraints.DihedralAngleConstraint method) (fullrmc.Constraints.DistanceConstraints.DistanceConstraint method) (fullrmc.Constraints.ImproperAngleConstraints.ImproperAngleConstraint method) (fullrmc.Constraints.PairCorrelationConstraints.PairCorrelationConstraint method) (fullrmc.Constraints.PairDistributionConstraints.PairDistributionConstraint method) (fullrmc.Constraints.RadialDistributionConstraints.RadialDistributionConstraint method) (fullrmc.Constraints.StructureFactorConstraints.StructureFactorConstraint method) (fullrmc.Core.Constraint.Constraint method) compute_as_if_amputated() (fullrmc.Constraints.AtomicCoordinationConstraints.AtomicCoordinationNumberConstraint method) (fullrmc.Constraints.BondConstraints.BondConstraint method) (fullrmc.Constraints.DistanceConstraints.DistanceConstraint method) (fullrmc.Constraints.PairCorrelationConstraints.PairCorrelationConstraint method) (fullrmc.Constraints.PairDistributionConstraints.PairDistributionConstraint method) (fullrmc.Constraints.RadialDistributionConstraints.RadialDistributionConstraint method) (fullrmc.Constraints.StructureFactorConstraints.StructureFactorConstraint method) (fullrmc.Core.Constraint.Constraint method) compute_as_if_inserted() (fullrmc.Core.Constraint.Constraint method) compute_before_move() (fullrmc.Constraints.AngleConstraints.BondsAngleConstraint method) (fullrmc.Constraints.AtomicCoordinationConstraints.AtomicCoordinationNumberConstraint method) (fullrmc.Constraints.BondConstraints.BondConstraint method) (fullrmc.Constraints.DihedralAngleConstraints.DihedralAngleConstraint method) (fullrmc.Constraints.DistanceConstraints.DistanceConstraint method) (fullrmc.Constraints.ImproperAngleConstraints.ImproperAngleConstraint method) (fullrmc.Constraints.PairCorrelationConstraints.PairCorrelationConstraint method) (fullrmc.Constraints.PairDistributionConstraints.PairDistributionConstraint method) (fullrmc.Constraints.RadialDistributionConstraints.RadialDistributionConstraint method) (fullrmc.Constraints.StructureFactorConstraints.StructureFactorConstraint method) (fullrmc.Core.Constraint.Constraint method) compute_data() (fullrmc.Constraints.AngleConstraints.BondsAngleConstraint method) (fullrmc.Constraints.AtomicCoordinationConstraints.AtomicCoordinationNumberConstraint method) (fullrmc.Constraints.BondConstraints.BondConstraint method) (fullrmc.Constraints.DihedralAngleConstraints.DihedralAngleConstraint method) (fullrmc.Constraints.DistanceConstraints.DistanceConstraint method) (fullrmc.Constraints.ImproperAngleConstraints.ImproperAngleConstraint method) (fullrmc.Constraints.PairCorrelationConstraints.PairCorrelationConstraint method) (fullrmc.Constraints.PairDistributionConstraints.PairDistributionConstraint method) (fullrmc.Constraints.RadialDistributionConstraints.RadialDistributionConstraint method) (fullrmc.Constraints.StructureFactorConstraints.StructureFactorConstraint method) (fullrmc.Core.Constraint.Constraint method)

compute_loss() (fullrmc.Core.Constraint.ExperimentalConstraint method) compute_standard_error() (fullrmc.Constraints.AngleConstraints.BondsAngleConstraint method) (fullrmc.Constraints.AtomicCoordinationConstraints.AtomicCoordinationNumberConstraint method) (fullrmc.Constraints.BondConstraints.BondConstraint method) (fullrmc.Constraints.DihedralAngleConstraints.DihedralAngleConstraint method) (fullrmc.Constraints.DistanceConstraints.DistanceConstraint method) (fullrmc.Constraints.ImproperAngleConstraints.ImproperAngleConstraint method) (fullrmc.Constraints.PairDistributionConstraints.PairDistributionConstraint method) (fullrmc.Constraints.StructureFactorConstraints.StructureFactorConstraint method) (fullrmc.Core.Constraint.Constraint method) compute_total_standard_error() (fullrmc.Engine.Engine method) Constraint (class in fullrmc.Core.Constraint) constraintId (fullrmc.Core.Constraint.Constraint property) constraintName (fullrmc.Core.Constraint.Constraint property) constraints (fullrmc.Engine.Engine property) constraintsCloneLUT (fullrmc.Engine.Grains_Engine property) constraintStats (fullrmc.Constraints.AngleConstraints.BondsAngleConstraint property) (fullrmc.Constraints.BondConstraints.BondConstraint property) (fullrmc.Constraints.DihedralAngleConstraints.DihedralAngleConstraint property) (fullrmc.Constraints.DistanceConstraints.DistanceConstraint property) (fullrmc.Constraints.ImproperAngleConstraints.ImproperAngleConstraint property) constraintWeight (fullrmc.Core.Constraint.Constraint property) convert_Fq_to_Sq() (in module fullrmc.Constraints.Collection) convert_Gr_to_gr() (in module fullrmc.Constraints.Collection) convert_Gr_to_Rr() (in module fullrmc.Constraints.Collection) convert_Rr_to_Gr() (in module fullrmc.Constraints.Collection) convert_Sq_to_Fq() (in module fullrmc.Constraints.Collection) coordinationNumberDefinition (fullrmc.Constraints.AtomicCoordinationConstraints.AtomicCoordinationNumberConstraint property) coordNumDef (fullrmc.Constraints.AtomicCoordinationConstraints.AtomicCoordinationNumberConstraint property) coresIndexes (fullrmc.Constraints.AtomicCoordinationConstraints.AtomicCoordinationNumberConstraint property) create() (fullrmc.Constraints.AngleConstraints.BondsAngleConstraint class method) (fullrmc.Constraints.AtomicCoordinationConstraints.AtomicCoordinationNumberConstraint class method) (fullrmc.Constraints.BondConstraints.BondConstraint class method) (fullrmc.Constraints.DihedralAngleConstraints.DihedralAngleConstraint class method) (fullrmc.Constraints.DistanceConstraints.DistanceConstraint class method) (fullrmc.Constraints.ImproperAngleConstraints.ImproperAngleConstraint class method) (fullrmc.Constraints.PairDistributionConstraints.PairDistributionConstraint class method) (fullrmc.Constraints.StructureFactorConstraints.StructureFactorConstraint class method) (fullrmc.Core.Constraint.Constraint class method) (fullrmc.Core.Group.EmptyGroup class method) (fullrmc.Core.Group.Group class method) (fullrmc.Core.GroupSelector.GroupSelector class method) (fullrmc.Core.GroupSelector.RecursiveGroupSelector class method) (fullrmc.Core.MoveGenerator.MoveGenerator class method) (fullrmc.Core.MoveGenerator.MoveGeneratorCollector class method) (fullrmc.Core.MoveGenerator.MoveGeneratorCombinator class method) (fullrmc.Generators.Removes.AtomsRemoveGenerator class method) create_angles_by_definition() (fullrmc.Constraints.AngleConstraints.BondsAngleConstraint method) (fullrmc.Constraints.DihedralAngleConstraints.DihedralAngleConstraint method) (fullrmc.Constraints.ImproperAngleConstraints.ImproperAngleConstraint method) create_bonds_by_definition() (fullrmc.Constraints.BondConstraints.BondConstraint method) create_frame_from_optimizer() (fullrmc.Engine.Engine method) create_molecules_angles() (fullrmc.Constraints.AngleConstraints.BondsAngleConstraint method) (fullrmc.Constraints.DihedralAngleConstraints.DihedralAngleConstraint method) (fullrmc.Constraints.ImproperAngleConstraints.ImproperAngleConstraint method) create_molecules_bonds() (fullrmc.Constraints.BondConstraints.BondConstraint method) create_optimization_code() (in module fullrmc.OptimizationEngine) create_snapshot() (fullrmc.Engine.Engine method) create_supercell_angles() (fullrmc.Constraints.AngleConstraints.BondsAngleConstraint method) create_supercell_bonds() (fullrmc.Constraints.BondConstraints.BondConstraint method) create_supercell_set_pdb() (fullrmc.Engine.Engine method) CrystalNanoparticle (class in fullrmc.SystemBuilderUtils) CrystalOptimizer (class in fullrmc.OptimizationEngine) CrystalSupercell (class in fullrmc.SystemBuilderUtils) currentRecur (fullrmc.Core.GroupSelector.RecursiveGroupSelector property) customPartialsScatteringPower (fullrmc.Core.Constraint.AtomsPairWeighting property) custPartScatteringPower (fullrmc.Core.Constraint.AtomsPairWeighting property) CylinderVolumeGenerator (class in fullrmc.Generators.Volumes)

D

data (fullrmc.Constraints.AtomicCoordinationConstraints.AtomicCoordinationNumberConstraint property) (fullrmc.Core.Constraint.Constraint property) dataWeights (fullrmc.Core.Constraint.ExperimentalConstraint property) decompose_seconds() (in module fullrmc.Core.Collection) default (fullrmc.Globals.Evaluators property) defaultLowerDistance (fullrmc.Constraints.DistanceConstraints.DistanceConstraint property) defaultUpperDistance (fullrmc.Constraints.DistanceConstraints.DistanceConstraint property) define_molecules() (fullrmc.Engine.Engine method) DefinedOrderSelector (class in fullrmc.Selectors.OrderedSelectors) Definitions (class in fullrmc.Globals) definitions (fullrmc.Globals.Definitions property) delete_frame() (fullrmc.Engine.Engine method) dftEngine (fullrmc.Engine.Engine property) DihedralAngleConstraint (class in fullrmc.Constraints.DihedralAngleConstraints) direction (fullrmc.Core.MoveGenerator.AxisUtils property) (fullrmc.Generators.Neighbours.TranslationTowardsNeighboursGenerator property) (fullrmc.Generators.Translations.TranslationAlongAxisGenerator property) (fullrmc.Generators.Translations.TranslationAlongSymmetryAxisGenerator property) (fullrmc.Generators.Translations.TranslationTowardsCenterGenerator property) (fullrmc.Generators.Volumes.CylinderVolumeGenerator property)

DirectionalOrderSelector (class in fullrmc.Selectors.OrderedSelectors) distance (fullrmc.Generators.Walks.WalkGenerator property) DistanceAgitationGenerator (class in fullrmc.Generators.Agitations) distanceBin (fullrmc.Constraints.PairDistributionConstraints.PairDistributionConstraint property) (fullrmc.Constraints.StructureFactorConstraints.StructureFactorConstraint property) DistanceConstraint (class in fullrmc.Constraints.DistanceConstraints) dq (fullrmc.Constraints.StructureFactorConstraints.StructureFactorConstraint property) dr (fullrmc.Constraints.StructureFactorConstraints.StructureFactorConstraint property) DummyGrains (class in fullrmc.Core.Collection) dump_groups_updated() (fullrmc.Engine.Engine method) duplicate_frame() (fullrmc.Engine.Engine method)

E

elementLimitsArray (fullrmc.Constraints.DistanceConstraints.DistanceConstraint property) elementPairs (fullrmc.Constraints.DistanceConstraints.DistanceConstraint property) elementPairsIndex (fullrmc.Constraints.DistanceConstraints.DistanceConstraint property) elements (fullrmc.Engine.Engine property) elementsIndex (fullrmc.Constraints.DistanceConstraints.DistanceConstraint property) (fullrmc.Engine.Engine property) elementsLUT (fullrmc.Constraints.DistanceConstraints.DistanceConstraint property) elementsPairs (fullrmc.Core.Constraint.AtomsPairWeighting property) elementsPairsScatteringPower (fullrmc.Core.Constraint.AtomsPairWeighting property) EmptyGroup (class in fullrmc.Core.Group) Engine (class in fullrmc.Engine) engine (fullrmc.Core.Constraint.Constraint property) (fullrmc.Core.GroupSelector.GroupSelector property) (fullrmc.Core.GroupSelector.RecursiveGroupSelector property) (fullrmc.OptimizationEngine.StochasticEngineOptimizer property) equate_constraints_variance() (fullrmc.Engine.Engine method) Evaluators (class in fullrmc.Globals) expand (fullrmc.Selectors.OrderedSelectors.DirectionalOrderSelector property) ExperimentalConstraint (class in fullrmc.Core.Constraint)

experimentalData (fullrmc.Core.Constraint.ExperimentalConstraint property) experimentalDistances (fullrmc.Constraints.PairDistributionConstraints.PairDistributionConstraint property) experimentalPDF (fullrmc.Constraints.PairDistributionConstraints.PairDistributionConstraint property) experimentalQValues (fullrmc.Constraints.StructureFactorConstraints.StructureFactorConstraint property) experimentalSF (fullrmc.Constraints.StructureFactorConstraints.StructureFactorConstraint property) explore (fullrmc.Core.GroupSelector.GroupSelector property) (fullrmc.Core.GroupSelector.RecursiveGroupSelector property) export() (fullrmc.Core.Constraint.Constraint method) (fullrmc.Core.Constraint.ExperimentalConstraint method) export_angles_constraint() (fullrmc.OptimizationEngine.CrystalOptimizer method) export_bonds_constraint() (fullrmc.OptimizationEngine.CrystalOptimizer method) export_cif() (fullrmc.Engine.Engine method) export_dihedrals_constraint() (fullrmc.OptimizationEngine.CrystalOptimizer method) export_distances_constraint() (fullrmc.OptimizationEngine.CrystalOptimizer method) export_impropers_constraint() (fullrmc.OptimizationEngine.CrystalOptimizer method) export_pdb() (fullrmc.Engine.Engine method) (fullrmc.Engine.InterceptHook method) export_snapshot() (fullrmc.Engine.Engine method) export_xyz() (fullrmc.Engine.Engine method)

F

filter (fullrmc.Generators.Neighbours.NeighboursGeneratorBase property) filter_atoms() (in module fullrmc.Core.Collection) find_example() (in module fullrmc.Examples) find_extrema() (in module fullrmc.Core.Collection) fit_scale_factor() (fullrmc.Core.Constraint.ExperimentalConstraint method) fix_path_sep() (in module fullrmc.Core.Collection) flexible (fullrmc.Constraints.DistanceConstraints.DistanceConstraint property) flip (fullrmc.Generators.Rotations.OrientationGenerator property) fold_supercell_to_unitcell() (in module fullrmc.Core.Collection) frames (fullrmc.Engine.Engine property) framesPath (fullrmc.Engine.Engine property) from_to_points_differences() (in module fullrmc.Core.pairs_distances) full_angles_coords() (in module fullrmc.Core.angles) full_atomic_distances_coords() (in module fullrmc.Core.atomic_distances) full_bonds_coords() (in module fullrmc.Core.bonds) full_dihedral_angles_coords() (in module fullrmc.Core.dihedral_angles) full_improper_angles_coords() (in module fullrmc.Core.improper_angles) full_pairs_histograms_coords() (in module fullrmc.Core.pairs_histograms) full_pairs_histograms_dists() (in module fullrmc.Core.pairs_histograms) full_stack() (in module fullrmc.Core.Collection) fullrmc module fullrmc.__pkginfo__ module fullrmc.Constraints.AngleConstraints module fullrmc.Constraints.AtomicCoordinationConstraints module fullrmc.Constraints.BondConstraints module fullrmc.Constraints.Collection module fullrmc.Constraints.DihedralAngleConstraints module fullrmc.Constraints.DistanceConstraints module fullrmc.Constraints.ImproperAngleConstraints module fullrmc.Constraints.PairCorrelationConstraints module fullrmc.Constraints.PairDistributionConstraints module fullrmc.Constraints.RadialDistributionConstraints module fullrmc.Constraints.StructureFactorConstraints module fullrmc.Core.angles module fullrmc.Core.atomic_coordination module fullrmc.Core.atomic_distances module fullrmc.Core.bonds module

fullrmc.Core.boundary_conditions_collection module fullrmc.Core.Collection module fullrmc.Core.Constraint module fullrmc.Core.dihedral_angles module fullrmc.Core.Group module fullrmc.Core.GroupSelector module fullrmc.Core.improper_angles module fullrmc.Core.MoveGenerator module fullrmc.Core.pairs_distances module fullrmc.Core.pairs_histograms module fullrmc.Core.reciprocal_space module fullrmc.Engine module fullrmc.Examples module fullrmc.Generators.Agitations module fullrmc.Generators.Neighbours module fullrmc.Generators.Removes module fullrmc.Generators.Rotations module fullrmc.Generators.Swaps module fullrmc.Generators.Translations module fullrmc.Generators.Volumes module fullrmc.Generators.Walks module fullrmc.Globals module fullrmc.OptimizationEngine module fullrmc.Selectors.OrderedSelectors module fullrmc.Selectors.RandomSelectors module fullrmc.SystemBuilderUtils module

G

gaussian() (in module fullrmc.Core.Collection) generate() (fullrmc.Core.Collection.BiasedRandomFloatGenerator method) (fullrmc.Core.Collection.BiasedRandomIntegerGenerator method) (fullrmc.Core.Collection.RandomFloatGenerator method) (fullrmc.Core.Collection.RandomIntegerGenerator method) generate_circle_tangent_vector() (in module fullrmc.Core.Collection) generate_plane_random_vector() (in module fullrmc.Core.Collection) generate_points_on_sphere() (in module fullrmc.Core.Collection) generate_random_float() (in module fullrmc.Core.Collection) (in module fullrmc.Core.MoveGenerator) (in module fullrmc.Engine) (in module fullrmc.Generators.Agitations) (in module fullrmc.Generators.Neighbours) (in module fullrmc.Generators.Rotations) (in module fullrmc.Generators.Translations) (in module fullrmc.Generators.Volumes) (in module fullrmc.Generators.Walks) (in module fullrmc.Selectors.RandomSelectors) (in module fullrmc.SystemBuilderUtils) generate_random_vector() (in module fullrmc.Core.Collection) generate_random_xyz_vector() (in module fullrmc.Core.Collection) generate_vectors_in_solid_angle() (in module fullrmc.Core.Collection) generate_vectors_in_truncated_cone() (in module fullrmc.Core.Collection) generated (fullrmc.Engine.Engine property) generatorsParams (fullrmc.Selectors.OrderedSelectors.DirectionalOrderSelector property) generatorsWeight (fullrmc.Core.MoveGenerator.MoveGeneratorCollector property) get_adjusted_scale_factor() (fullrmc.Constraints.PairCorrelationConstraints.PairCorrelationConstraint method) (fullrmc.Constraints.StructureFactorConstraints.Grains_ReducedStructureFactorConstraint method) (fullrmc.Constraints.StructureFactorConstraints.ReducedStructureFactorConstraint method) (fullrmc.Constraints.StructureFactorConstraints.StructureFactorConstraint method) (fullrmc.Core.Constraint.ExperimentalConstraint method) get_angles_computation() (fullrmc.OptimizationEngine.CrystalOptimizer method) get_angles_standard_error() (fullrmc.OptimizationEngine.CrystalOptimizer method) get_angles_summary() (fullrmc.OptimizationEngine.CrystalOptimizer method) get_available_examples() (in module fullrmc.Examples) get_axis_angle_from_rotation_matrix() (in module fullrmc.Core.Collection) get_bond_length() (in module fullrmc.Core.Collection) get_bonds_computation() (fullrmc.OptimizationEngine.CrystalOptimizer method) get_bonds_standard_error() (fullrmc.OptimizationEngine.CrystalOptimizer method) get_bonds_summary() (fullrmc.OptimizationEngine.CrystalOptimizer method) get_bounds() (in module fullrmc.SystemBuilderUtils) get_caller_frames() (in module fullrmc.Core.Collection) get_coarse_grained() (in module fullrmc.Core.Collection) get_constraint_original_value() (fullrmc.Constraints.PairDistributionConstraints.PairDistributionConstraint method) (fullrmc.Constraints.StructureFactorConstraints.StructureFactorConstraint method) (fullrmc.Core.Constraint.Constraint method) get_constraint_value() (fullrmc.Constraints.AngleConstraints.BondsAngleConstraint method) (fullrmc.Constraints.AtomicCoordinationConstraints.AtomicCoordinationNumberConstraint method) (fullrmc.Constraints.BondConstraints.BondConstraint method) (fullrmc.Constraints.DihedralAngleConstraints.DihedralAngleConstraint method) (fullrmc.Constraints.DistanceConstraints.DistanceConstraint method) (fullrmc.Constraints.ImproperAngleConstraints.ImproperAngleConstraint method) (fullrmc.Constraints.PairCorrelationConstraints.PairCorrelationConstraint method) (fullrmc.Constraints.PairDistributionConstraints.PairDistributionConstraint method) (fullrmc.Constraints.RadialDistributionConstraints.RadialDistributionConstraint method) (fullrmc.Constraints.StructureFactorConstraints.StructureFactorConstraint method) (fullrmc.Core.Constraint.Constraint method) get_constraints() (fullrmc.Engine.Engine method) get_definition() (fullrmc.Globals.Definitions method) get_delta_limits_chain() (in module fullrmc.OptimizationEngine) get_dihedrals_computation() (fullrmc.OptimizationEngine.CrystalOptimizer method) get_dihedrals_standard_error() (fullrmc.OptimizationEngine.CrystalOptimizer method) get_dihedrals_summary() (fullrmc.OptimizationEngine.CrystalOptimizer method) get_distances_computation() (fullrmc.OptimizationEngine.CrystalOptimizer method) get_distances_standard_error() (fullrmc.OptimizationEngine.CrystalOptimizer method) get_distances_summary() (fullrmc.OptimizationEngine.CrystalOptimizer method) get_elapsed_time() (in module fullrmc.Core.Collection) get_element_pairs_thermal_factors() (in module fullrmc.Constraints.Collection) get_ellipsoid_dimension_bounds() (in module fullrmc.SystemBuilderUtils) get_ellipsoid_params() (in module fullrmc.SystemBuilderUtils) get_engine_hook() (fullrmc.Engine.InterceptHook class method) get_evaluator() (fullrmc.Globals.Evaluators method) get_examples_path() (in module fullrmc.Examples) get_experimental_constraint_standard_error() (fullrmc.OptimizationEngine.CrystalOptimizer method) get_frame_category() (fullrmc.Engine.Engine method) get_frame_data() (fullrmc.Core.Constraint.Constraint method) (fullrmc.Core.Constraint.ExperimentalConstraint method) get_frame_supercell() (fullrmc.Engine.Engine method) get_Gr_shape_function() (fullrmc.Constraints.Collection.ShapeFunction method) get_gr_shape_function() (fullrmc.Constraints.Collection.ShapeFunction method)

get_Grains_Engine() (in module fullrmc.Constraints.Collection) get_histogram_data() (fullrmc.Constraints.DistanceConstraints.DistanceConstraint method) get_impropers_computation() (fullrmc.OptimizationEngine.CrystalOptimizer method) get_impropers_standard_error() (fullrmc.OptimizationEngine.CrystalOptimizer method) get_impropers_summary() (fullrmc.OptimizationEngine.CrystalOptimizer method) get_indexes() (fullrmc.Core.Group.Group method) (fullrmc.Core.Group.SubsetGroup method) get_memory_usage() (in module fullrmc.Core.Collection) get_minimum_needed_supercell() (fullrmc.OptimizationEngine.CrystalOptimizer method) get_module() (fullrmc.Globals.Definitions method) get_multiframe_metadata() (fullrmc.Engine.Engine method) get_multiframe_structure() (fullrmc.Engine.Engine method) get_multiframe_weights() (fullrmc.Constraints.PairDistributionConstraints.PairDistributionConstraint method) get_normal_filter() (in module fullrmc.Core.Collection) get_optimization_cycle_parameters_template() (fullrmc.Core.Constraint.HistogramCorrections method) get_optimization_parameters_template() (fullrmc.Core.Constraint.HistogramCorrections static method) get_optimization_step_parameters_template() (fullrmc.Core.Constraint.HistogramCorrections method) get_orientation_matrix() (in module fullrmc.Core.Collection) get_orientation_vector() (in module fullrmc.SystemBuilderUtils) get_original_data() (fullrmc.Engine.Engine method) get_parameters_for_nanoscopic() (fullrmc.Constraints.PairDistributionConstraints.PairDistributionConstraint class method) (fullrmc.Constraints.StructureFactorConstraints.StructureFactorConstraint class method) (fullrmc.Core.Constraint.Constraint class method) (fullrmc.Core.Constraint.ExperimentalConstraint class method) get_path() (in module fullrmc.Core.Collection) get_pdb() (fullrmc.Engine.Engine method) (fullrmc.OptimizationEngine.CrystalOptimizer method) (fullrmc.SystemBuilderUtils.AtomsTransmutator method) (fullrmc.SystemBuilderUtils.BaseAmorphousBuilder method) (fullrmc.SystemBuilderUtils.CrystalNanoparticle method) (fullrmc.SystemBuilderUtils.CrystalSupercell method) (fullrmc.SystemBuilderUtils.NanoDomains method) get_pdf_scattering_power() (in module fullrmc.Core.Collection) get_principal_axis() (in module fullrmc.Core.Collection) get_process_children() (in module fullrmc.Core.Collection) get_qmax_corrections_array() (in module fullrmc.Constraints.Collection) get_random_perpendicular_vector() (in module fullrmc.Core.Collection) get_ready_for_move() (fullrmc.Core.MoveGenerator.SwapGenerator method) get_real_elements_weight() (in module fullrmc.Core.Collection) get_reciprocal_basis() (in module fullrmc.Core.boundary_conditions_collection) get_resolution_corrections_array() (in module fullrmc.Constraints.Collection) get_rotation_matrix() (in module fullrmc.Core.Collection) get_Rr_shape_function() (fullrmc.Constraints.Collection.ShapeFunction method) get_sites_symmetry_fit() (in module fullrmc.OptimizationEngine) get_stats() (fullrmc.Constraints.DistanceConstraints.DistanceConstraint method) get_supercell_params() (in module fullrmc.SystemBuilderUtils) get_superposition_transformation() (in module fullrmc.Core.Collection) get_thermal_corrections_arrays() (in module fullrmc.Constraints.Collection) get_total() (fullrmc.Constraints.PairCorrelationConstraints.PairCorrelationConstraint method) (fullrmc.Constraints.PairDistributionConstraints.PairDistributionConstraint method) (fullrmc.Constraints.RadialDistributionConstraints.RadialDistributionConstraint method) (fullrmc.Constraints.StructureFactorConstraints.StructureFactorConstraint method) (fullrmc.Core.Constraint.ExperimentalConstraint method) get_trdf_scattering_power() (in module fullrmc.Core.Collection) get_unitcells_neighbours() (in module fullrmc.Core.Collection) get_update_parameters() (fullrmc.Core.Constraint.Constraint method) Gr2SqMatrix (fullrmc.Constraints.StructureFactorConstraints.StructureFactorConstraint property) Gr_to_sq() (in module fullrmc.Core.reciprocal_space) gr_to_sq() (in module fullrmc.Core.reciprocal_space) Grains_Constraint (class in fullrmc.Core.Constraint) Grains_DistanceConstraint (class in fullrmc.Constraints.DistanceConstraints) Grains_Engine (class in fullrmc.Engine) Grains_NormalizedStructureFactorConstraint (class in fullrmc.Constraints.StructureFactorConstraints) Grains_PairCorrelationConstraint (class in fullrmc.Constraints.PairCorrelationConstraints) Grains_PairDistributionConstraint (class in fullrmc.Constraints.PairDistributionConstraints) Grains_RadialDistributionConstraint (class in fullrmc.Constraints.RadialDistributionConstraints) Grains_ReducedStructureFactorConstraint (class in fullrmc.Constraints.StructureFactorConstraints) Grains_StructureFactorConstraint (class in fullrmc.Constraints.StructureFactorConstraints) grainsData (fullrmc.Core.Constraint.Grains_Constraint property) grainSize (fullrmc.Engine.Grains_Engine property) grainsWeight (fullrmc.Engine.Grains_Engine property) Group (class in fullrmc.Core.Group) group (fullrmc.Core.MoveGenerator.MoveGenerator property) group_structure_atoms_into_neighbours() (in module fullrmc.Core.Collection) groupAtomsIndexes (fullrmc.Core.MoveGenerator.SwapGenerator property) groupAxis (fullrmc.Generators.Rotations.OrientationGenerator property) groups (fullrmc.Engine.Engine property) GroupSelector (class in fullrmc.Core.GroupSelector) groupSelector (fullrmc.Engine.Engine property) groupsWeight (fullrmc.Selectors.RandomSelectors.WeightedRandomSelector property)

H

height (fullrmc.Generators.Neighbours.TranslationTowardsNeighboursGenerator property) HistogramCorrections (class in fullrmc.Core.Constraint)

histogramParameters (fullrmc.Core.Constraint.HistogramCorrections property) histogramSize (fullrmc.Constraints.PairDistributionConstraints.PairDistributionConstraint property) (fullrmc.Constraints.StructureFactorConstraints.StructureFactorConstraint property)

I

id (fullrmc.Engine.Engine property) ImproperAngleConstraint (class in fullrmc.Constraints.ImproperAngleConstraints) increment_accepted() (fullrmc.Core.Constraint.Constraint method) increment_tried() (fullrmc.Core.Constraint.Constraint method) index (fullrmc.Selectors.OrderedSelectors.DefinedOrderSelector property) indexes (fullrmc.Core.Group.EmptyGroup property) (fullrmc.Core.Group.Group property) indexesIndex (fullrmc.Constraints.DistanceConstraints.DistanceConstraint property) indexesLUT (fullrmc.Constraints.DistanceConstraints.DistanceConstraint property) indexLimitsArray (fullrmc.Constraints.DistanceConstraints.DistanceConstraint property) indexPairs (fullrmc.Constraints.DistanceConstraints.DistanceConstraint property) indexPairsIndex (fullrmc.Constraints.DistanceConstraints.DistanceConstraint property) info (fullrmc.Engine.Engine property) initialize_constraints() (fullrmc.Engine.Engine method) inShellDefIdxs (fullrmc.Constraints.AtomicCoordinationConstraints.AtomicCoordinationNumberConstraint property) InterceptHook (class in fullrmc.Engine)

is_engine() (fullrmc.Engine.Engine method) is_frame() (fullrmc.Engine.Engine method) is_in_engine() (fullrmc.Core.Constraint.Constraint method) is_integer() (in module fullrmc.Core.Collection) is_number() (in module fullrmc.Core.Collection) is_singular() (fullrmc.Core.Constraint.SingularConstraint method) isExploring (fullrmc.Core.GroupSelector.GroupSelector property) (fullrmc.Core.GroupSelector.RecursiveGroupSelector property) isIBC (fullrmc.Engine.Engine property) isNewSelection (fullrmc.Core.GroupSelector.GroupSelector property) (fullrmc.Core.GroupSelector.RecursiveGroupSelector property) isPBC (fullrmc.Engine.Engine property) isRecurring (fullrmc.Core.GroupSelector.GroupSelector property) (fullrmc.Core.GroupSelector.RecursiveGroupSelector property) isRefining (fullrmc.Core.GroupSelector.GroupSelector property) (fullrmc.Core.GroupSelector.RecursiveGroupSelector property)

L

lastSelectedAtomsIndex (fullrmc.Engine.Engine property) lastSelectedGroup (fullrmc.Engine.Engine property) lastSelectedGroupIndex (fullrmc.Engine.Engine property) lastSelectedIndex (fullrmc.Core.GroupSelector.RecursiveGroupSelector property) length (fullrmc.Generators.Volumes.CylinderVolumeGenerator property) limits (fullrmc.Core.Constraint.ExperimentalConstraint property) limitsIndexEnd (fullrmc.Core.Constraint.ExperimentalConstraint property) limitsIndexStart (fullrmc.Core.Constraint.ExperimentalConstraint property) list_to_ranges() (in module fullrmc.Core.Collection) listen() (fullrmc.Constraints.AngleConstraints.BondsAngleConstraint method) (fullrmc.Constraints.AtomicCoordinationConstraints.AtomicCoordinationNumberConstraint method) (fullrmc.Constraints.BondConstraints.BondConstraint method) (fullrmc.Constraints.DihedralAngleConstraints.DihedralAngleConstraint method) (fullrmc.Constraints.DistanceConstraints.DistanceConstraint method) (fullrmc.Constraints.ImproperAngleConstraints.ImproperAngleConstraint method) (fullrmc.Constraints.PairDistributionConstraints.PairDistributionConstraint method) (fullrmc.Constraints.StructureFactorConstraints.StructureFactorConstraint method) (fullrmc.Core.Collection.ListenerBase method)

ListenerBase (class in fullrmc.Core.Collection) listenerData (fullrmc.Core.Constraint.Constraint property) listenerId (fullrmc.Core.Collection.ListenerBase property) listeners (fullrmc.Core.Collection.Broadcaster property) lists_almost_equal() (in module fullrmc.Core.Collection) load() (fullrmc.Engine.Engine class method) locker (fullrmc.Engine.Engine property) lossFunction (fullrmc.Engine.Engine property) lowerLimit (fullrmc.Core.Collection.RandomFloatGenerator property) (fullrmc.Core.Collection.RandomIntegerGenerator property) lowerShells (fullrmc.Constraints.AtomicCoordinationConstraints.AtomicCoordinationNumberConstraint property)

M

make_json_ready() (in module fullrmc.Core.Collection) maxAtoms (fullrmc.Constraints.AtomicCoordinationConstraints.AtomicCoordinationNumberConstraint property) maximumCollected (fullrmc.Core.MoveGenerator.RemoveGenerator property) maximumDistance (fullrmc.Constraints.PairDistributionConstraints.PairDistributionConstraint property) (fullrmc.Constraints.StructureFactorConstraints.StructureFactorConstraint property) maximumLength (fullrmc.Engine.Engine property) maximumOffsetAngle (fullrmc.Generators.Rotations.OrientationGenerator property) maxUnitcellSize (fullrmc.OptimizationEngine.CrystalOptimizer property) mesoscopicPrior (fullrmc.Core.Constraint.Constraint property) (fullrmc.Core.Constraint.ExperimentalConstraint property) mesoscopicWeight (fullrmc.Core.Constraint.Constraint property) (fullrmc.Core.Constraint.ExperimentalConstraint property) minAtoms (fullrmc.Constraints.AtomicCoordinationConstraints.AtomicCoordinationNumberConstraint property) minimumDistance (fullrmc.Constraints.PairDistributionConstraints.PairDistributionConstraint property) (fullrmc.Constraints.StructureFactorConstraints.StructureFactorConstraint property) module fullrmc fullrmc.__pkginfo__ fullrmc.Constraints.AngleConstraints fullrmc.Constraints.AtomicCoordinationConstraints fullrmc.Constraints.BondConstraints fullrmc.Constraints.Collection fullrmc.Constraints.DihedralAngleConstraints fullrmc.Constraints.DistanceConstraints fullrmc.Constraints.ImproperAngleConstraints fullrmc.Constraints.PairCorrelationConstraints fullrmc.Constraints.PairDistributionConstraints fullrmc.Constraints.RadialDistributionConstraints fullrmc.Constraints.StructureFactorConstraints fullrmc.Core.angles fullrmc.Core.atomic_coordination fullrmc.Core.atomic_distances fullrmc.Core.bonds fullrmc.Core.boundary_conditions_collection fullrmc.Core.Collection fullrmc.Core.Constraint fullrmc.Core.dihedral_angles fullrmc.Core.Group fullrmc.Core.GroupSelector fullrmc.Core.improper_angles fullrmc.Core.MoveGenerator fullrmc.Core.pairs_distances fullrmc.Core.pairs_histograms fullrmc.Core.reciprocal_space fullrmc.Engine fullrmc.Examples fullrmc.Generators.Agitations fullrmc.Generators.Neighbours fullrmc.Generators.Removes fullrmc.Generators.Rotations fullrmc.Generators.Swaps fullrmc.Generators.Translations fullrmc.Generators.Volumes fullrmc.Generators.Walks fullrmc.Globals fullrmc.OptimizationEngine fullrmc.Selectors.OrderedSelectors fullrmc.Selectors.RandomSelectors fullrmc.SystemBuilderUtils

modules (fullrmc.Globals.Definitions property) molecules (fullrmc.Engine.Engine property) moleculesElementSummary (fullrmc.Engine.Engine property) moleculesIndex (fullrmc.Engine.Engine property) moleculesName (fullrmc.Engine.Engine property) moleculesNameSummary (fullrmc.Engine.Engine property) moleculesSummary (fullrmc.Engine.Engine property) move() (fullrmc.Core.MoveGenerator.MoveGenerator method) (fullrmc.Core.MoveGenerator.MoveGeneratorCollector method) (fullrmc.Core.MoveGenerator.MoveGeneratorCombinator method) (fullrmc.Core.MoveGenerator.PathGenerator method) (fullrmc.Core.MoveGenerator.RemoveGenerator method) move_accepted() (fullrmc.Core.GroupSelector.GroupSelector method) (fullrmc.Selectors.RandomSelectors.SmartRandomSelector method) move_rejected() (fullrmc.Core.GroupSelector.GroupSelector method) (fullrmc.Selectors.RandomSelectors.SmartRandomSelector method) MoveGenerator (class in fullrmc.Core.MoveGenerator) moveGenerator (fullrmc.Core.Group.EmptyGroup property) (fullrmc.Core.Group.Group property) MoveGeneratorCollector (class in fullrmc.Core.MoveGenerator) MoveGeneratorCombinator (class in fullrmc.Core.MoveGenerator) multi_atoms_coord_number_coords() (in module fullrmc.Core.atomic_coordination) multi_atoms_coord_number_totdists() (in module fullrmc.Core.atomic_coordination) multiframe (fullrmc.Engine.Grains_Engine property) multiframe_structure_reset() (fullrmc.Engine.Engine method) multiframe_structure_reset_constraints() (fullrmc.Engine.Engine method) multiframe_structure_set_grain_size() (fullrmc.Engine.Engine method) multiframe_structure_update_constraints() (in module fullrmc.Core.Collection) multiframes (fullrmc.Engine.Engine property) multiframeStructure (fullrmc.Engine.Engine property) multiple_atomic_distances_coords() (in module fullrmc.Core.atomic_distances) multiple_pairs_histograms_coords() (in module fullrmc.Core.pairs_histograms) multiple_pairs_histograms_dists() (in module fullrmc.Core.pairs_histograms)

N

name (fullrmc.Core.Group.Group property) (fullrmc.Engine.Engine property) (fullrmc.OptimizationEngine.CrystalOptimizer property) (fullrmc.OptimizationEngine.StochasticEngineOptimizer property) nameLimitsArray (fullrmc.Constraints.DistanceConstraints.DistanceConstraint property) namePairs (fullrmc.Constraints.DistanceConstraints.DistanceConstraint property) namePairsIndex (fullrmc.Constraints.DistanceConstraints.DistanceConstraint property) names (fullrmc.Engine.Engine property) namesIndex (fullrmc.Constraints.DistanceConstraints.DistanceConstraint property) (fullrmc.Engine.Engine property) namesLUT (fullrmc.Constraints.DistanceConstraints.DistanceConstraint property) NanoDomains (class in fullrmc.SystemBuilderUtils) nanoscopic_compute_after_move() (fullrmc.Constraints.DistanceConstraints.Grains_DistanceConstraint method) (fullrmc.Constraints.PairCorrelationConstraints.Grains_PairCorrelationConstraint method) (fullrmc.Constraints.PairDistributionConstraints.Grains_PairDistributionConstraint method) (fullrmc.Constraints.RadialDistributionConstraints.Grains_RadialDistributionConstraint method) (fullrmc.Constraints.StructureFactorConstraints.Grains_StructureFactorConstraint method) (fullrmc.Core.Constraint.Grains_Constraint method) nanoscopic_compute_before_move() (fullrmc.Constraints.DistanceConstraints.Grains_DistanceConstraint method) (fullrmc.Constraints.PairCorrelationConstraints.Grains_PairCorrelationConstraint method) (fullrmc.Constraints.PairDistributionConstraints.Grains_PairDistributionConstraint method) (fullrmc.Constraints.RadialDistributionConstraints.Grains_RadialDistributionConstraint method) (fullrmc.Constraints.StructureFactorConstraints.Grains_StructureFactorConstraint method) (fullrmc.Core.Constraint.Grains_Constraint method) nanoscopic_compute_data() (fullrmc.Constraints.DistanceConstraints.Grains_DistanceConstraint method) (fullrmc.Constraints.PairCorrelationConstraints.Grains_PairCorrelationConstraint method) (fullrmc.Constraints.PairDistributionConstraints.Grains_PairDistributionConstraint method) (fullrmc.Constraints.RadialDistributionConstraints.Grains_RadialDistributionConstraint method) (fullrmc.Constraints.StructureFactorConstraints.Grains_StructureFactorConstraint method) (fullrmc.Core.Constraint.Grains_Constraint method) nanoscopicData (fullrmc.Core.Constraint.Constraint property) (fullrmc.Core.Constraint.ExperimentalConstraint property) neighbours (fullrmc.Generators.Neighbours.NeighboursGeneratorBase property)

NeighboursGeneratorBase (class in fullrmc.Generators.Neighbours) normalize() (fullrmc.Engine.BackwardCompatibility class method) normalize_constraints_variance() (fullrmc.Engine.Engine method) normalize_path() (fullrmc.Core.MoveGenerator.PathGenerator method) (fullrmc.Generators.Rotations.RotationAboutSymmetryAxisPath method) (fullrmc.Generators.Translations.TranslationAlongSymmetryAxisPath method) NormalizedStructureFactorConstraint (class in fullrmc.Constraints.StructureFactorConstraints) numberDensity (fullrmc.Engine.Engine property) numberOfAtoms (fullrmc.Engine.Engine property) (fullrmc.Engine.Grains_Engine property) numberOfAtomsPerChainIdentifier (fullrmc.Engine.Engine property) numberOfAtomsPerElement (fullrmc.Engine.Engine property) numberOfAtomsPerGrain (fullrmc.Engine.Grains_Engine property) numberOfAtomsPerName (fullrmc.Constraints.DistanceConstraints.DistanceConstraint property) (fullrmc.Engine.Engine property) numberOfAtomsPerResidue (fullrmc.Engine.Engine property) numberOfAtomsPerSegment (fullrmc.Engine.Engine property) numberOfAtomsPerSequence (fullrmc.Engine.Engine property) numberOfAtomsPerTag (fullrmc.Constraints.DistanceConstraints.DistanceConstraint property) numberOfChainIdentifiers (fullrmc.Engine.Engine property) numberOfCores (fullrmc.Constraints.AtomicCoordinationConstraints.AtomicCoordinationNumberConstraint property) numberOfElements (fullrmc.Constraints.DistanceConstraints.DistanceConstraint property) (fullrmc.Engine.Engine property) numberOfGrains (fullrmc.Engine.Grains_Engine property) numberOfIndexes (fullrmc.Constraints.DistanceConstraints.DistanceConstraint property) numberOfMolecules (fullrmc.Engine.Engine property) numberOfNames (fullrmc.Constraints.DistanceConstraints.DistanceConstraint property) (fullrmc.Engine.Engine property) numberOfNeighbours (fullrmc.Generators.Neighbours.NeighboursGeneratorBase property) numberOfResidues (fullrmc.Engine.Engine property) numberOfSegments (fullrmc.Engine.Engine property) numberOfSequences (fullrmc.Engine.Engine property) numberOfTags (fullrmc.Constraints.DistanceConstraints.DistanceConstraint property)

O

optimizationParameters (fullrmc.Core.Constraint.Constraint property) optimizations (fullrmc.Engine.Engine property) optimize_code() (fullrmc.OptimizationEngine.ChainedAtomsOptimizerGenerator method) optimizedParameters (fullrmc.OptimizationEngine.CrystalOptimizer property) optimizedStructure (fullrmc.OptimizationEngine.CrystalOptimizer property) optimizer (fullrmc.Engine.Engine property) optimizer_add_configuration() (fullrmc.Engine.Engine method) optimizer_backup_state() (fullrmc.Engine.Engine method) optimizer_configuration_to_stochastic() (fullrmc.Engine.Engine method) optimizer_delete_state() (fullrmc.Engine.Engine method) optimizer_get_constraints_parameters() (fullrmc.Engine.Engine method) optimizer_optimizedParameters (fullrmc.Engine.Engine property) optimizer_remove_configuration() (fullrmc.Engine.Engine method) optimizer_remove_experimental_constraint() (fullrmc.Engine.Engine method) optimizer_rename_configuration() (fullrmc.Engine.Engine method) optimizer_reset_structure() (fullrmc.Engine.Engine method) optimizer_restore_last_state() (fullrmc.Engine.Engine method) optimizer_restore_state() (fullrmc.Engine.Engine method) optimizer_run() (fullrmc.Engine.Engine method) optimizer_run_optimization() (fullrmc.Engine.Engine method) optimizer_save() (fullrmc.Engine.Engine method) optimizer_set_angles_constraint() (fullrmc.Engine.Engine method) optimizer_set_bonds_constraint() (fullrmc.Engine.Engine method)

optimizer_set_dihedrals_constraint() (fullrmc.Engine.Engine method) optimizer_set_distances_constraint() (fullrmc.Engine.Engine method) optimizer_set_experimental_constraint() (fullrmc.Engine.Engine method) optimizer_set_impropers_constraint() (fullrmc.Engine.Engine method) optimizer_set_optimization_distance() (fullrmc.Engine.Engine method) optimizer_set_optimization_result() (fullrmc.Engine.Engine method) optimizer_set_parameters() (fullrmc.Engine.Engine method) optimizer_set_scaleup() (fullrmc.Engine.Engine method) optimizer_set_structure() (fullrmc.Engine.Engine method) optimizer_set_stucture_redefinitions() (fullrmc.Engine.Engine method) optimizer_set_supercell() (fullrmc.Engine.Engine method) optimizer_set_used_configuration() (fullrmc.Engine.Engine method) optimizer_update_experimental_constraint() (fullrmc.Engine.Engine method) optimizer_usedConfiguration (fullrmc.Engine.Engine property) optimizerSolver (fullrmc.Engine.Engine property) order (fullrmc.Selectors.OrderedSelectors.DefinedOrderSelector property) orient() (in module fullrmc.Core.Collection) orientationAxis (fullrmc.Generators.Rotations.OrientationGenerator property) OrientationGenerator (class in fullrmc.Generators.Rotations) originalData (fullrmc.Core.Constraint.Constraint property) originalStructure (fullrmc.OptimizationEngine.CrystalOptimizer property) originalWeights (fullrmc.Core.Collection.BiasedRandomFloatGenerator property) (fullrmc.Core.Collection.BiasedRandomIntegerGenerator property) override (fullrmc.Core.GroupSelector.RecursiveGroupSelector property)

P

PairCorrelationConstraint (class in fullrmc.Constraints.PairCorrelationConstraints) PairDistributionConstraint (class in fullrmc.Constraints.PairDistributionConstraints) pairs_differences_to_indexcoords() (in module fullrmc.Core.pairs_distances) pairs_differences_to_multi_indexcoords() (in module fullrmc.Core.pairs_distances) pairs_differences_to_multi_points() (in module fullrmc.Core.pairs_distances) pairs_differences_to_point() (in module fullrmc.Core.pairs_distances) pairs_distances_to_indexcoords() (in module fullrmc.Core.pairs_distances) pairs_distances_to_multi_indexcoords() (in module fullrmc.Core.pairs_distances) pairs_distances_to_multi_points() (in module fullrmc.Core.pairs_distances) pairs_distances_to_point() (in module fullrmc.Core.pairs_distances) pairsDefinition (fullrmc.Constraints.DistanceConstraints.DistanceConstraint property) pairsWeight (fullrmc.Core.Constraint.AtomsPairWeighting property) parameters (fullrmc.Constraints.AngleConstraints.BondsAngleConstraint property) (fullrmc.Constraints.AtomicCoordinationConstraints.AtomicCoordinationNumberConstraint property) (fullrmc.Constraints.BondConstraints.BondConstraint property) (fullrmc.Constraints.DihedralAngleConstraints.DihedralAngleConstraint property) (fullrmc.Constraints.DistanceConstraints.DistanceConstraint property) (fullrmc.Constraints.ImproperAngleConstraints.ImproperAngleConstraint property) (fullrmc.Constraints.PairDistributionConstraints.PairDistributionConstraint property) (fullrmc.Constraints.StructureFactorConstraints.StructureFactorConstraint property) (fullrmc.Core.Constraint.Constraint property) (fullrmc.Core.Group.EmptyGroup property) (fullrmc.Core.Group.Group property) (fullrmc.Core.Group.SubsetGroup property) (fullrmc.Core.GroupSelector.GroupSelector property) (fullrmc.Core.GroupSelector.RecursiveGroupSelector property) (fullrmc.Core.MoveGenerator.MoveGeneratorCollector property) (fullrmc.Core.MoveGenerator.MoveGeneratorCombinator property) (fullrmc.Generators.Agitations.AngleAgitationGenerator property) (fullrmc.Generators.Agitations.DistanceAgitationGenerator property) (fullrmc.Generators.Neighbours.TranslationTowardsNeighboursGenerator property) (fullrmc.Generators.Removes.AtomsRemoveGenerator property) (fullrmc.Generators.Rotations.OrientationGenerator property) (fullrmc.Generators.Rotations.RotationAboutAxisGenerator property) (fullrmc.Generators.Rotations.RotationAboutSymmetryAxisGenerator property) (fullrmc.Generators.Rotations.RotationAboutSymmetryAxisPath property) (fullrmc.Generators.Rotations.RotationGenerator property) (fullrmc.Generators.Rotations.RotationRandomGenerator property) (fullrmc.Generators.Swaps.SwapCentersGenerator property) (fullrmc.Generators.Swaps.SwapPositionsGenerator property) (fullrmc.Generators.Translations.TranslationAlongAxisGenerator property) (fullrmc.Generators.Translations.TranslationAlongSymmetryAxisGenerator property) (fullrmc.Generators.Translations.TranslationAlongSymmetryAxisPath property) (fullrmc.Generators.Translations.TranslationGenerator property) (fullrmc.Generators.Translations.TranslationRandomGenerator property) (fullrmc.Generators.Translations.TranslationTowardsAxisGenerator property) (fullrmc.Generators.Translations.TranslationTowardsCenterGenerator property) (fullrmc.Generators.Translations.TranslationTowardsSymmetryAxisGenerator property) (fullrmc.Generators.Volumes.CylinderVolumeGenerator property) (fullrmc.Generators.Walks.WalkGenerator property) (fullrmc.Selectors.OrderedSelectors.DefinedOrderSelector property) (fullrmc.Selectors.OrderedSelectors.DirectionalOrderSelector property) (fullrmc.Selectors.RandomSelectors.RandomSelector property) (fullrmc.Selectors.RandomSelectors.SmartRandomSelector property) (fullrmc.Selectors.RandomSelectors.WeightedRandomSelector property)

parameters() (fullrmc.Core.MoveGenerator.MoveGenerator method) parse_molecules_from_box_of_atoms() (in module fullrmc.Core.Collection) partialsScatteringPower (fullrmc.Core.Constraint.AtomsPairWeighting property) password (fullrmc.Engine.Engine property) path (fullrmc.Core.MoveGenerator.PathGenerator property) (fullrmc.Engine.Engine property) (fullrmc.OptimizationEngine.CrystalOptimizer property) PathGenerator (class in fullrmc.Core.MoveGenerator) pdb (fullrmc.Engine.Engine property) pick_from_list() (fullrmc.Core.MoveGenerator.RemoveGenerator method) (fullrmc.Generators.Removes.AtomsRemoveGenerator method) plot() (fullrmc.Constraints.AngleConstraints.BondsAngleConstraint method) (fullrmc.Constraints.AtomicCoordinationConstraints.AtomicCoordinationNumberConstraint method) (fullrmc.Constraints.BondConstraints.BondConstraint method) (fullrmc.Constraints.DihedralAngleConstraints.DihedralAngleConstraint method) (fullrmc.Constraints.DistanceConstraints.DistanceConstraint method) (fullrmc.Constraints.ImproperAngleConstraints.ImproperAngleConstraint method) (fullrmc.Constraints.PairCorrelationConstraints.PairCorrelationConstraint method) (fullrmc.Constraints.PairDistributionConstraints.PairDistributionConstraint method) (fullrmc.Constraints.RadialDistributionConstraints.RadialDistributionConstraint method) (fullrmc.Constraints.StructureFactorConstraints.Grains_NormalizedStructureFactorConstraint method) (fullrmc.Constraints.StructureFactorConstraints.Grains_ReducedStructureFactorConstraint method) (fullrmc.Constraints.StructureFactorConstraints.NormalizedStructureFactorConstraint method) (fullrmc.Constraints.StructureFactorConstraints.ReducedStructureFactorConstraint method) (fullrmc.Constraints.StructureFactorConstraints.StructureFactorConstraint method) (fullrmc.Core.Constraint.Constraint method) (fullrmc.Core.Constraint.ExperimentalConstraint method) plot_angles_constraint() (fullrmc.OptimizationEngine.CrystalOptimizer method) plot_bonds_constraint() (fullrmc.OptimizationEngine.CrystalOptimizer method) plot_dihedrals_constraint() (fullrmc.OptimizationEngine.CrystalOptimizer method) plot_distances_constraint() (fullrmc.OptimizationEngine.CrystalOptimizer method) plot_impropers_constraint() (fullrmc.OptimizationEngine.CrystalOptimizer method) plot_mesoscopic_distribution() (fullrmc.Core.Constraint.ExperimentalConstraint method) pop() (fullrmc.Globals.Evaluators method) position (fullrmc.Core.GroupSelector.RecursiveGroupSelector property) PositionUtils (class in fullrmc.Core.MoveGenerator) print_available_examples() (in module fullrmc.Examples)

Q

qmax (fullrmc.Constraints.StructureFactorConstraints.StructureFactorConstraint property) qmaxArray (fullrmc.Core.Constraint.HistogramCorrections property)

qmaxCorrections (fullrmc.Core.Constraint.HistogramCorrections property) qmin (fullrmc.Constraints.StructureFactorConstraints.StructureFactorConstraint property)

R

RadialDistributionConstraint (class in fullrmc.Constraints.RadialDistributionConstraints) radius (fullrmc.Generators.Volumes.CylinderVolumeGenerator property) raise_if_collected() (in module fullrmc.Core.Collection) randfloat() (in module fullrmc.Core.Constraint) RandomFloatGenerator (class in fullrmc.Core.Collection) RandomIntegerGenerator (class in fullrmc.Core.Collection) randomize (fullrmc.Core.MoveGenerator.MoveGeneratorCollector property) (fullrmc.Core.MoveGenerator.PathGenerator property) RandomSelector (class in fullrmc.Selectors.RandomSelectors) RandomSubsetGroup (class in fullrmc.Core.Group) rang (fullrmc.Core.Collection.RandomFloatGenerator property) (fullrmc.Core.Collection.RandomIntegerGenerator property) range() (in module fullrmc.Globals) read_cif_set_pdb() (fullrmc.Engine.Engine method) read_xyz_set_pdb() (fullrmc.Engine.Engine method) realCoordinates (fullrmc.Engine.Engine property) rebin() (in module fullrmc.Core.Collection) reciprocalBasisVectors (fullrmc.Engine.Engine property) recur (fullrmc.Core.GroupSelector.RecursiveGroupSelector property) recurAsSet (fullrmc.Core.GroupSelector.RecursiveGroupSelector property) RecursiveGroupSelector (class in fullrmc.Core.GroupSelector) ReducedStructureFactorConstraint (class in fullrmc.Constraints.StructureFactorConstraints) refine (fullrmc.Core.GroupSelector.GroupSelector property) (fullrmc.Core.GroupSelector.RecursiveGroupSelector property) reinit_frame() (fullrmc.Engine.Engine method) reject_amputation() (fullrmc.Constraints.AngleConstraints.BondsAngleConstraint method) (fullrmc.Constraints.AtomicCoordinationConstraints.AtomicCoordinationNumberConstraint method) (fullrmc.Constraints.BondConstraints.BondConstraint method) (fullrmc.Constraints.DihedralAngleConstraints.DihedralAngleConstraint method) (fullrmc.Constraints.DistanceConstraints.DistanceConstraint method) (fullrmc.Constraints.ImproperAngleConstraints.ImproperAngleConstraint method) (fullrmc.Constraints.PairDistributionConstraints.PairDistributionConstraint method) (fullrmc.Constraints.StructureFactorConstraints.StructureFactorConstraint method) (fullrmc.Core.Constraint.Constraint method) reject_insertion() (fullrmc.Core.Constraint.Constraint method) reject_move() (fullrmc.Constraints.AngleConstraints.BondsAngleConstraint method) (fullrmc.Constraints.AtomicCoordinationConstraints.AtomicCoordinationNumberConstraint method) (fullrmc.Constraints.BondConstraints.BondConstraint method) (fullrmc.Constraints.DihedralAngleConstraints.DihedralAngleConstraint method) (fullrmc.Constraints.DistanceConstraints.DistanceConstraint method) (fullrmc.Constraints.ImproperAngleConstraints.ImproperAngleConstraint method) (fullrmc.Constraints.PairDistributionConstraints.PairDistributionConstraint method) (fullrmc.Constraints.StructureFactorConstraints.StructureFactorConstraint method) (fullrmc.Core.Constraint.Constraint method)

rejectProbability (fullrmc.Core.Constraint.RigidConstraint property) reload_frame() (fullrmc.Engine.Engine method) remove_constraint() (fullrmc.OptimizationEngine.StochasticEngineOptimizer method) remove_constraints() (fullrmc.Engine.Engine method) remove_groups() (fullrmc.Engine.Engine method) remove_listener() (fullrmc.Core.Collection.Broadcaster method) removed (fullrmc.Engine.Engine property) RemoveGenerator (class in fullrmc.Core.MoveGenerator) rename_frame() (fullrmc.Engine.Engine method) rename_molecule_atoms() (fullrmc.Engine.Engine method) rename_molecules() (fullrmc.Engine.Engine method) repository (fullrmc.Engine.Engine property) RequireMoveGeneratorMeta (class in fullrmc.Core.MoveGenerator) reset() (fullrmc.OptimizationEngine.CrystalOptimizer method) reset_constraint() (fullrmc.Core.Constraint.Constraint method) (fullrmc.Core.Constraint.ExperimentalConstraint method) reset_constraints() (fullrmc.Engine.Engine method) reset_constraints_variance() (fullrmc.Engine.Engine method) reset_engine() (fullrmc.Engine.Engine method) reset_if_collected_out_of_date() (in module fullrmc.Core.Collection) reset_loss_data() (fullrmc.Engine.Engine method) reset_standard_error() (fullrmc.Engine.InterceptHook method) reset_structure() (fullrmc.OptimizationEngine.CrystalOptimizer method) residues (fullrmc.Engine.Engine property) resolutionArray (fullrmc.Core.Constraint.HistogramCorrections property) resolutionCorrections (fullrmc.Core.Constraint.HistogramCorrections property) resolve_path() (in module fullrmc.Core.Collection) RigidConstraint (class in fullrmc.Core.Constraint) rmax (fullrmc.Constraints.StructureFactorConstraints.StructureFactorConstraint property) rmin (fullrmc.Constraints.StructureFactorConstraints.StructureFactorConstraint property) rotate() (in module fullrmc.Core.Collection) RotationAboutAxisGenerator (class in fullrmc.Generators.Rotations) RotationAboutSymmetryAxisGenerator (class in fullrmc.Generators.Rotations) RotationAboutSymmetryAxisPath (class in fullrmc.Generators.Rotations) RotationGenerator (class in fullrmc.Generators.Rotations) RotationRandomGenerator (class in fullrmc.Generators.Rotations) run() (fullrmc.Engine.Engine method) (fullrmc.Engine.Grains_Engine method) run_optimization() (fullrmc.OptimizationEngine.CrystalOptimizer method) (fullrmc.OptimizationEngine.StochasticEngineOptimizer method) run_optimization_cycle() (fullrmc.Core.Constraint.HistogramCorrections method) (fullrmc.OptimizationEngine.StochasticEngineOptimizer method) run_optimization_step() (fullrmc.Core.Constraint.HistogramCorrections method)

S

save() (fullrmc.Engine.Engine method) (fullrmc.Engine.Grains_Engine method) save_engine() (fullrmc.Engine.InterceptHook method) scaleFactor (fullrmc.Core.Constraint.ExperimentalConstraint property) scheme (fullrmc.Core.Collection.BiasedRandomFloatGenerator property) (fullrmc.Core.Collection.BiasedRandomIntegerGenerator property) search_and_set_angles() (fullrmc.Constraints.AngleConstraints.BondsAngleConstraint method) search_and_set_bonds() (fullrmc.Constraints.BondConstraints.BondConstraint method) segments (fullrmc.Engine.Engine property) select_index() (fullrmc.Core.GroupSelector.GroupSelector method) (fullrmc.Core.GroupSelector.RecursiveGroupSelector method) (fullrmc.Selectors.OrderedSelectors.DefinedOrderSelector method) (fullrmc.Selectors.RandomSelectors.RandomSelector method) (fullrmc.Selectors.RandomSelectors.SmartRandomSelector method) (fullrmc.Selectors.RandomSelectors.WeightedRandomSelector method) selectionScheme (fullrmc.Core.MoveGenerator.MoveGeneratorCollector property) (fullrmc.Selectors.RandomSelectors.WeightedRandomSelector property) selector (fullrmc.Core.GroupSelector.RecursiveGroupSelector property) sequences (fullrmc.Engine.Engine property) set_accepted() (fullrmc.Core.Constraint.Constraint method) set_active_atoms_data_after_move() (fullrmc.Core.Constraint.Constraint method) set_active_atoms_data_before_move() (fullrmc.Core.Constraint.Constraint method) set_adjust_move_generators() (fullrmc.Selectors.OrderedSelectors.DirectionalOrderSelector method) set_adjust_scale_factor() (fullrmc.Core.Constraint.ExperimentalConstraint method) set_after_move_standard_error() (fullrmc.Core.Constraint.Constraint method) set_agitate() (fullrmc.Generators.Agitations.AngleAgitationGenerator method) (fullrmc.Generators.Agitations.DistanceAgitationGenerator method) set_allow_fitting_scale_factor() (fullrmc.Core.MoveGenerator.RemoveGenerator method) set_amplitude() (fullrmc.Core.MoveGenerator.AmplitudeUtils method) (fullrmc.Generators.Agitations.AngleAgitationGenerator method) (fullrmc.Generators.Agitations.DistanceAgitationGenerator method) (fullrmc.Generators.Rotations.RotationGenerator method) (fullrmc.Generators.Rotations.RotationRandomGenerator method) (fullrmc.Generators.Translations.TranslationRandomGenerator method) (fullrmc.Generators.Volumes.VolumeGenerator method) set_amputation_data() (fullrmc.Core.Constraint.Constraint method) set_amputation_standard_error() (fullrmc.Core.Constraint.Constraint method) set_angle() (fullrmc.Core.MoveGenerator.AxisUtils method) (fullrmc.Generators.Translations.TranslationTowardsAxisGenerator method) (fullrmc.Generators.Translations.TranslationTowardsCenterGenerator method) (fullrmc.Generators.Translations.TranslationTowardsSymmetryAxisGenerator method) (fullrmc.Generators.Walks.WalkGenerator method) set_angles() (fullrmc.Constraints.AngleConstraints.BondsAngleConstraint method) (fullrmc.Constraints.DihedralAngleConstraints.DihedralAngleConstraint method) (fullrmc.Constraints.ImproperAngleConstraints.ImproperAngleConstraint method) set_angles_constraint() (fullrmc.OptimizationEngine.CrystalOptimizer method) set_atoms_list() (fullrmc.Core.MoveGenerator.RemoveGenerator method) set_atoms_weight() (fullrmc.Core.Constraint.AtomsPairWeighting method) set_axis() (fullrmc.Core.MoveGenerator.AxisUtils method) (fullrmc.Generators.Rotations.RotationAboutAxisGenerator method) (fullrmc.Generators.Rotations.RotationAboutSymmetryAxisGenerator method) (fullrmc.Generators.Rotations.RotationAboutSymmetryAxisPath method) (fullrmc.Generators.Translations.TranslationAlongAxisGenerator method) (fullrmc.Generators.Translations.TranslationAlongSymmetryAxisGenerator method) (fullrmc.Generators.Translations.TranslationAlongSymmetryAxisPath method) (fullrmc.Generators.Volumes.CylinderVolumeGenerator method) set_bias() (fullrmc.Core.Collection.BiasedRandomFloatGenerator method) set_bias_factor() (fullrmc.Selectors.RandomSelectors.SmartRandomSelector method) set_bias_height() (fullrmc.Core.Collection.BiasedRandomIntegerGenerator method) set_bonds() (fullrmc.Constraints.BondConstraints.BondConstraint method) set_bonds_constraint() (fullrmc.OptimizationEngine.CrystalOptimizer method) set_bonds_cutoff() (fullrmc.SystemBuilderUtils.BaseAmorphousBuilder method) (fullrmc.SystemBuilderUtils.NanoDomains method) set_bottom() (fullrmc.Generators.Neighbours.TranslationTowardsNeighboursGenerator method) set_boundary_conditions() (fullrmc.Engine.Engine method) (fullrmc.SystemBuilderUtils.AmorphousNanoparticle method) (fullrmc.SystemBuilderUtils.BaseAmorphousBuilder method) (fullrmc.SystemBuilderUtils.NanoDomains method) set_center() (fullrmc.Generators.Translations.TranslationTowardsCenterGenerator method) (fullrmc.Generators.Volumes.VolumeGenerator method) (fullrmc.Selectors.OrderedSelectors.DirectionalOrderSelector method) set_cifs() (fullrmc.SystemBuilderUtils.BaseCrystalBuilder method) set_collection() (fullrmc.Core.MoveGenerator.MoveGeneratorCollector method) set_combination() (fullrmc.Core.MoveGenerator.MoveGeneratorCombinator method) set_computation_cost() (fullrmc.Core.Constraint.Constraint method) set_coordination_number_definition() (fullrmc.Constraints.AtomicCoordinationConstraints.AtomicCoordinationNumberConstraint method) set_data() (fullrmc.Core.Constraint.Constraint method) set_data_weights() (fullrmc.Core.Constraint.ExperimentalConstraint method) set_default_lower_distance() (fullrmc.Constraints.DistanceConstraints.DistanceConstraint method) set_default_upper_distance() (fullrmc.Constraints.DistanceConstraints.DistanceConstraint method) set_density() (fullrmc.SystemBuilderUtils.BaseAmorphousBuilder method) set_dihedrals_constraint() (fullrmc.OptimizationEngine.CrystalOptimizer method) set_direction() (fullrmc.Core.MoveGenerator.AxisUtils method) (fullrmc.Generators.Neighbours.TranslationTowardsNeighboursGenerator method) (fullrmc.Generators.Translations.TranslationAlongAxisGenerator method) (fullrmc.Generators.Translations.TranslationAlongSymmetryAxisGenerator method) (fullrmc.Generators.Translations.TranslationTowardsCenterGenerator method) (fullrmc.Generators.Volumes.CylinderVolumeGenerator method) set_distance() (fullrmc.Generators.Walks.WalkGenerator method) set_distance_constraint() (fullrmc.Engine.Grains_Engine method) set_distances_constraint() (fullrmc.OptimizationEngine.CrystalOptimizer method) set_dr() (fullrmc.Constraints.StructureFactorConstraints.StructureFactorConstraint method) set_elements_index() (fullrmc.Engine.Engine method) set_engine() (fullrmc.Core.GroupSelector.GroupSelector method) (fullrmc.Core.GroupSelector.RecursiveGroupSelector method) (fullrmc.OptimizationEngine.StochasticEngineOptimizer method) set_expand() (fullrmc.Selectors.OrderedSelectors.DirectionalOrderSelector method) set_experimental_constraints() (fullrmc.Engine.Grains_Engine method) set_experimental_data() (fullrmc.Constraints.PairDistributionConstraints.PairDistributionConstraint method) (fullrmc.Constraints.StructureFactorConstraints.StructureFactorConstraint method) (fullrmc.Core.Constraint.ExperimentalConstraint method) set_explore() (fullrmc.Core.GroupSelector.RecursiveGroupSelector method) set_filter() (fullrmc.Generators.Neighbours.NeighboursGeneratorBase method) set_flexible() (fullrmc.Constraints.DistanceConstraints.DistanceConstraint method) set_flip() (fullrmc.Generators.Rotations.OrientationGenerator method) set_generators_parameters() (fullrmc.Selectors.OrderedSelectors.DirectionalOrderSelector method) set_grains() (fullrmc.Engine.Grains_Engine method) set_grains_data() (fullrmc.Core.Constraint.Grains_Constraint method) set_group() (fullrmc.Core.MoveGenerator.MoveGenerator method) (fullrmc.Core.MoveGenerator.MoveGeneratorCollector method) (fullrmc.Core.MoveGenerator.MoveGeneratorCombinator method) (fullrmc.Core.MoveGenerator.SwapGenerator method) (fullrmc.Generators.Swaps.SwapCentersGenerator method) set_group_axis() (fullrmc.Generators.Rotations.OrientationGenerator method) set_group_selector() (fullrmc.Engine.Engine method) set_group_weight() (fullrmc.Selectors.RandomSelectors.WeightedRandomSelector method) set_groups() (fullrmc.Engine.Engine method) set_groups_as_atoms() (fullrmc.Engine.Engine method) set_groups_as_molecules() (fullrmc.Engine.Engine method) set_groups_as_planes() (fullrmc.Engine.Engine method) set_groups_as_rods() (fullrmc.Engine.Engine method) set_groups_as_subframes() (fullrmc.Engine.Grains_Engine method) set_groups_as_unitcells() (fullrmc.Engine.Engine method) set_height() (fullrmc.Generators.Neighbours.TranslationTowardsNeighboursGenerator method) set_impropers_constraint() (fullrmc.OptimizationEngine.CrystalOptimizer method) set_indexes() (fullrmc.Core.Group.EmptyGroup method) (fullrmc.Core.Group.Group method) set_insertion_number() (fullrmc.SystemBuilderUtils.BaseAmorphousBuilder method) set_length() (fullrmc.Generators.Volumes.CylinderVolumeGenerator method) set_limits() (fullrmc.Constraints.PairDistributionConstraints.PairDistributionConstraint method) (fullrmc.Constraints.StructureFactorConstraints.StructureFactorConstraint method) set_log_file() (fullrmc.Engine.Engine method) set_loss_function() (fullrmc.Engine.Engine method) set_lower_limit() (fullrmc.Core.Collection.RandomFloatGenerator method) (fullrmc.Core.Collection.RandomIntegerGenerator method) set_maximum_collected() (fullrmc.Core.MoveGenerator.RemoveGenerator method) set_maximum_offset_angle() (fullrmc.Generators.Rotations.OrientationGenerator method) set_molecular_groups() (fullrmc.Engine.Engine method) set_molecules_index() (fullrmc.Engine.Engine method) set_move_generator() (fullrmc.Core.Group.EmptyGroup method) (fullrmc.Core.Group.Group method) set_multiframe_structure() (fullrmc.Engine.Engine method) set_name() (fullrmc.Core.Group.Group method) (fullrmc.OptimizationEngine.CrystalOptimizer method) (fullrmc.OptimizationEngine.StochasticEngineOptimizer method) (fullrmc.SystemBuilderUtils.AtomsTransmutator method) (fullrmc.SystemBuilderUtils.BaseAmorphousBuilder method) (fullrmc.SystemBuilderUtils.BaseCrystalBuilder method) (fullrmc.SystemBuilderUtils.NanoDomains method) set_names_index() (fullrmc.Engine.Engine method) set_number_density() (fullrmc.Engine.Engine method) set_number_of_neighbours() (fullrmc.Generators.Neighbours.NeighboursGeneratorBase method) set_optimization_distance() (fullrmc.OptimizationEngine.CrystalOptimizer method)

set_optimization_parameters() (fullrmc.Core.Constraint.HistogramCorrections method) set_optimization_result() (fullrmc.OptimizationEngine.CrystalOptimizer method) (fullrmc.OptimizationEngine.StochasticEngineOptimizer method) set_order() (fullrmc.Selectors.OrderedSelectors.DefinedOrderSelector method) set_orientation() (fullrmc.SystemBuilderUtils.CrystalNanoparticle method) set_orientation_axis() (fullrmc.Generators.Rotations.OrientationGenerator method) set_override() (fullrmc.Core.GroupSelector.RecursiveGroupSelector method) set_pair_correlation_constraint() (fullrmc.OptimizationEngine.CrystalOptimizer method) set_pair_distribution_constraint() (fullrmc.OptimizationEngine.CrystalOptimizer method) set_pairs_definition() (fullrmc.Constraints.DistanceConstraints.DistanceConstraint method) set_parameters() (fullrmc.OptimizationEngine.CrystalOptimizer method) set_path() (fullrmc.Core.MoveGenerator.PathGenerator method) (fullrmc.OptimizationEngine.CrystalOptimizer method) set_pdb() (fullrmc.Engine.Engine method) set_pdbs() (fullrmc.SystemBuilderUtils.AmorphousNanoparticle method) (fullrmc.SystemBuilderUtils.BaseAmorphousBuilder method) set_penetration() (fullrmc.SystemBuilderUtils.AmorphousNanoparticle method) set_prior_structure() (fullrmc.SystemBuilderUtils.BaseAmorphousBuilder method) set_qmax_corrections() (fullrmc.Core.Constraint.HistogramCorrections method) set_radial_distribution_constraint() (fullrmc.OptimizationEngine.CrystalOptimizer method) set_radius() (fullrmc.Generators.Volumes.CylinderVolumeGenerator method) set_randomize() (fullrmc.Core.MoveGenerator.MoveGeneratorCollector method) (fullrmc.Core.MoveGenerator.PathGenerator method) set_real_coordinates() (fullrmc.Engine.Engine method) set_recur() (fullrmc.Core.GroupSelector.RecursiveGroupSelector method) set_refine() (fullrmc.Core.GroupSelector.RecursiveGroupSelector method) set_reject_probability() (fullrmc.Core.Constraint.RigidConstraint method) set_resolution_corrections() (fullrmc.Core.Constraint.HistogramCorrections method) set_restrictions() (fullrmc.SystemBuilderUtils.BaseAmorphousBuilder method) set_rmax() (fullrmc.Constraints.StructureFactorConstraints.StructureFactorConstraint method) set_rmin() (fullrmc.Constraints.StructureFactorConstraints.StructureFactorConstraint method) set_scale_factor() (fullrmc.Core.Constraint.ExperimentalConstraint method) set_scaleup() (fullrmc.OptimizationEngine.CrystalOptimizer method) set_selection_scheme() (fullrmc.Core.MoveGenerator.MoveGeneratorCollector method) set_shape_function_parameters() (fullrmc.Constraints.PairCorrelationConstraints.Grains_PairCorrelationConstraint method) (fullrmc.Constraints.PairDistributionConstraints.Grains_PairDistributionConstraint method) (fullrmc.Constraints.PairDistributionConstraints.PairDistributionConstraint method) (fullrmc.Constraints.RadialDistributionConstraints.Grains_RadialDistributionConstraint method) set_shrink() (fullrmc.Generators.Agitations.AngleAgitationGenerator method) (fullrmc.Generators.Agitations.DistanceAgitationGenerator method) set_shuffle() (fullrmc.Core.MoveGenerator.MoveGeneratorCombinator method) set_size() (fullrmc.Core.Group.SubsetGroup method) set_standard_error() (fullrmc.Core.Constraint.Constraint method) set_state() (fullrmc.Core.Constraint.Constraint method) set_stoichiometry() (fullrmc.SystemBuilderUtils.BaseAmorphousBuilder method) set_structure() (fullrmc.OptimizationEngine.CrystalOptimizer method) set_structure_factor_constraint() (fullrmc.OptimizationEngine.CrystalOptimizer method) set_structure_supercell() (fullrmc.Engine.Engine method) set_stucture_redefinitions() (fullrmc.OptimizationEngine.CrystalOptimizer method) set_subframes_data() (fullrmc.Core.Constraint.Grains_Constraint method) set_supercell() (fullrmc.OptimizationEngine.CrystalOptimizer method) (fullrmc.SystemBuilderUtils.CrystalSupercell method) set_supercell_groups_as_planes() (fullrmc.Engine.Engine method) set_supercell_groups_as_rods() (fullrmc.Engine.Engine method) set_swap_length() (fullrmc.Core.MoveGenerator.SwapGenerator method) (fullrmc.Generators.Swaps.SwapCentersGenerator method) (fullrmc.Generators.Swaps.SwapPositionsGenerator method) set_swap_list() (fullrmc.Core.MoveGenerator.SwapGenerator method) set_symmetric() (fullrmc.Generators.Agitations.AngleAgitationGenerator method) (fullrmc.Generators.Agitations.DistanceAgitationGenerator method) set_tags() (fullrmc.Constraints.DistanceConstraints.DistanceConstraint method) set_thermal_corrections() (fullrmc.Core.Constraint.HistogramCorrections method) set_timeout() (fullrmc.Engine.Engine method) set_tolerance() (fullrmc.Engine.Engine method) set_top() (fullrmc.Generators.Neighbours.TranslationTowardsNeighboursGenerator method) set_tried() (fullrmc.Core.Constraint.Constraint method) set_unbias() (fullrmc.Core.Collection.BiasedRandomFloatGenerator method) set_unbias_factor() (fullrmc.Selectors.RandomSelectors.SmartRandomSelector method) set_unbias_height() (fullrmc.Core.Collection.BiasedRandomIntegerGenerator method) set_unbias_threshold() (fullrmc.Core.Collection.BiasedRandomIntegerGenerator method) set_unitcell_atoms_box_coordinates() (fullrmc.OptimizationEngine.CrystalOptimizer method) set_unitcell_boundary_conditions() (fullrmc.OptimizationEngine.CrystalOptimizer method) set_unitcell_sites_position() (fullrmc.OptimizationEngine.CrystalOptimizer method) set_update() (fullrmc.Generators.Neighbours.NeighboursGeneratorBase method) set_upper_limit() (fullrmc.Core.Collection.RandomFloatGenerator method) (fullrmc.Core.Collection.RandomIntegerGenerator method) set_used() (fullrmc.Core.Constraint.Constraint method) set_used_frame() (fullrmc.Engine.Engine method) set_variance() (fullrmc.Core.Constraint.Constraint method) set_weighting() (fullrmc.Core.Constraint.AtomsPairWeighting method) set_weights() (fullrmc.Core.Collection.BiasedRandomFloatGenerator method) (fullrmc.Core.Collection.BiasedRandomIntegerGenerator method) (fullrmc.Core.MoveGenerator.MoveGeneratorCollector method) (fullrmc.Selectors.RandomSelectors.WeightedRandomSelector method) set_window_function() (fullrmc.Constraints.PairDistributionConstraints.PairDistributionConstraint method) (fullrmc.Constraints.StructureFactorConstraints.StructureFactorConstraint method) shapeArray (fullrmc.Constraints.PairDistributionConstraints.PairDistributionConstraint property) shapeFuncParams (fullrmc.Constraints.PairDistributionConstraints.PairDistributionConstraint property) ShapeFunction (class in fullrmc.Constraints.Collection) shapeUpdateFreq (fullrmc.Constraints.PairDistributionConstraints.PairDistributionConstraint property) shellCenters (fullrmc.Constraints.PairDistributionConstraints.PairDistributionConstraint property) (fullrmc.Constraints.StructureFactorConstraints.StructureFactorConstraint property) shellsIndexes (fullrmc.Constraints.AtomicCoordinationConstraints.AtomicCoordinationNumberConstraint property) shellVolumes (fullrmc.Constraints.PairDistributionConstraints.PairDistributionConstraint property) (fullrmc.Constraints.StructureFactorConstraints.StructureFactorConstraint property) should_step_get_accepted() (fullrmc.Core.Constraint.RigidConstraint method) should_step_get_rejected() (fullrmc.Constraints.DistanceConstraints.DistanceConstraint method) (fullrmc.Core.Constraint.RigidConstraint method) shrink (fullrmc.Generators.Agitations.AngleAgitationGenerator property) (fullrmc.Generators.Agitations.DistanceAgitationGenerator property) shuffle (fullrmc.Core.MoveGenerator.MoveGeneratorCombinator property) sinc_convolution() (in module fullrmc.Core.Collection) single_atom_coord_number_coords() (in module fullrmc.Core.atomic_coordination) single_atom_coord_number_totdists() (in module fullrmc.Core.atomic_coordination) single_atom_multi_shells_coords() (in module fullrmc.Core.atomic_coordination) single_atom_multi_shells_totdists() (in module fullrmc.Core.atomic_coordination) single_atom_single_shell_coords() (in module fullrmc.Core.atomic_coordination) single_atom_single_shell_subdists() (in module fullrmc.Core.atomic_coordination) single_atom_single_shell_totdists() (in module fullrmc.Core.atomic_coordination) single_pairs_histograms() (in module fullrmc.Core.pairs_histograms) SingularConstraint (class in fullrmc.Core.Constraint) sitesSymmetryFit (fullrmc.OptimizationEngine.CrystalOptimizer property) size (fullrmc.Core.Group.SubsetGroup property) slice_structure_into_planes() (in module fullrmc.Core.Collection) slice_structure_into_rods() (in module fullrmc.Core.Collection) slice_supercell_structure_into_planes() (in module fullrmc.Core.Collection) slice_supercell_structure_into_rods() (in module fullrmc.Core.Collection) SmartRandomSelector (class in fullrmc.Selectors.RandomSelectors) smooth() (in module fullrmc.Core.Collection) sq_to_Gr() (in module fullrmc.Core.reciprocal_space) standardError (fullrmc.Core.Constraint.Constraint property) start_espresso_engine() (fullrmc.Engine.Engine method) state (fullrmc.Core.Constraint.Constraint property) (fullrmc.Engine.Engine property) stats (fullrmc.Constraints.DistanceConstraints.DistanceConstraint property) step (fullrmc.Core.Group.SubsetGroup property) (fullrmc.Core.MoveGenerator.PathGenerator property) step_function() (in module fullrmc.Core.Collection) StochasticEngineOptimizer (class in fullrmc.OptimizationEngine) stop_builder() (fullrmc.Engine.InterceptHook method) stop_engine() (fullrmc.Engine.InterceptHook method) structure (fullrmc.Engine.Grains_Engine property) StructureFactorConstraint (class in fullrmc.Constraints.StructureFactorConstraints) subframeGrainsLUT (fullrmc.Engine.Grains_Engine property) subframes (fullrmc.Engine.Grains_Engine property) subframesData (fullrmc.Core.Constraint.Grains_Constraint property) subframsLUT (fullrmc.Engine.Grains_Engine property) SubsetGroup (class in fullrmc.Core.Group) subsetIndexes (fullrmc.Core.Group.SubsetGroup property) supercell (fullrmc.Constraints.AngleConstraints.BondsAngleConstraint property) (fullrmc.Constraints.BondConstraints.BondConstraint property) (fullrmc.Engine.Engine property) superpose_array() (in module fullrmc.Core.Collection) swapAtomsIndexes (fullrmc.Core.MoveGenerator.SwapGenerator property) SwapCentersGenerator (class in fullrmc.Generators.Swaps) SwapGenerator (class in fullrmc.Core.MoveGenerator) swapItemIndex (fullrmc.Core.MoveGenerator.SwapGenerator property) swapLength (fullrmc.Core.MoveGenerator.SwapGenerator property) (fullrmc.Generators.Swaps.SwapCentersGenerator property) swapList (fullrmc.Core.MoveGenerator.SwapGenerator property) SwapPositionsGenerator (class in fullrmc.Generators.Swaps) symmetric (fullrmc.Generators.Agitations.AngleAgitationGenerator property) (fullrmc.Generators.Agitations.DistanceAgitationGenerator property)

T

tagLimitsArray (fullrmc.Constraints.DistanceConstraints.DistanceConstraint property) tagPairs (fullrmc.Constraints.DistanceConstraints.DistanceConstraint property) tagPairsIndex (fullrmc.Constraints.DistanceConstraints.DistanceConstraint property) tags (fullrmc.Constraints.AngleConstraints.BondsAngleConstraint property) (fullrmc.Constraints.BondConstraints.BondConstraint property) (fullrmc.Constraints.DistanceConstraints.DistanceConstraint property) tagsIndex (fullrmc.Constraints.DistanceConstraints.DistanceConstraint property) tagsLUT (fullrmc.Constraints.DistanceConstraints.DistanceConstraint property) thermalArrays (fullrmc.Core.Constraint.HistogramCorrections property) thermalCorrections (fullrmc.Core.Constraint.HistogramCorrections property) timeout (fullrmc.Engine.Engine property) tolerance (fullrmc.Engine.Engine property) tolerated (fullrmc.Engine.Engine property) top (fullrmc.Generators.Neighbours.TranslationTowardsNeighboursGenerator property) totalStandardError (fullrmc.Engine.Engine property) traditionalFrames (fullrmc.Engine.Engine property) transform_coordinates() (fullrmc.Core.MoveGenerator.MoveGenerator method) (fullrmc.Core.MoveGenerator.RemoveGenerator method) (fullrmc.Generators.Agitations.AngleAgitationGenerator method) (fullrmc.Generators.Agitations.DistanceAgitationGenerator method) (fullrmc.Generators.Neighbours.NeighboursGeneratorBase method) (fullrmc.Generators.Rotations.OrientationGenerator method) (fullrmc.Generators.Rotations.RotationAboutAxisGenerator method) (fullrmc.Generators.Rotations.RotationAboutSymmetryAxisGenerator method) (fullrmc.Generators.Rotations.RotationAboutSymmetryAxisPath method) (fullrmc.Generators.Rotations.RotationGenerator method) (fullrmc.Generators.Rotations.RotationRandomGenerator method) (fullrmc.Generators.Swaps.SwapCentersGenerator method) (fullrmc.Generators.Swaps.SwapPositionsGenerator method) (fullrmc.Generators.Translations.TranslationAlongAxisGenerator method) (fullrmc.Generators.Translations.TranslationAlongSymmetryAxisGenerator method) (fullrmc.Generators.Translations.TranslationAlongSymmetryAxisPath method) (fullrmc.Generators.Translations.TranslationGenerator method) (fullrmc.Generators.Translations.TranslationRandomGenerator method) (fullrmc.Generators.Translations.TranslationTowardsAxisGenerator method) (fullrmc.Generators.Translations.TranslationTowardsCenterGenerator method) (fullrmc.Generators.Translations.TranslationTowardsSymmetryAxisGenerator method) (fullrmc.Generators.Volumes.VolumeGenerator method) (fullrmc.Generators.Walks.WalkGenerator method) (in module fullrmc.Core.boundary_conditions_collection)

TranslationAlongAxisGenerator (class in fullrmc.Generators.Translations) TranslationAlongSymmetryAxisGenerator (class in fullrmc.Generators.Translations) TranslationAlongSymmetryAxisPath (class in fullrmc.Generators.Translations) TranslationGenerator (class in fullrmc.Generators.Translations) TranslationRandomGenerator (class in fullrmc.Generators.Translations) TranslationTowardsAxisGenerator (class in fullrmc.Generators.Translations) TranslationTowardsCenterGenerator (class in fullrmc.Generators.Translations) TranslationTowardsNeighboursGenerator (class in fullrmc.Generators.Neighbours) TranslationTowardsSymmetryAxisGenerator (class in fullrmc.Generators.Translations) tried (fullrmc.Core.Constraint.Constraint property) (fullrmc.Engine.Engine property)

U

unbias (fullrmc.Core.Collection.BiasedRandomFloatGenerator property) unbias_scheme_at_position() (fullrmc.Core.Collection.BiasedRandomFloatGenerator method) (fullrmc.Core.Collection.BiasedRandomIntegerGenerator method) unbias_scheme_by_index() (fullrmc.Core.Collection.BiasedRandomFloatGenerator method) (fullrmc.Core.Collection.BiasedRandomIntegerGenerator method) unbiasBins (fullrmc.Core.Collection.BiasedRandomFloatGenerator property) unbiasFactor (fullrmc.Selectors.RandomSelectors.SmartRandomSelector property) unbiasFWHM (fullrmc.Core.Collection.BiasedRandomFloatGenerator property) unbiasFWHMBins (fullrmc.Core.Collection.BiasedRandomFloatGenerator property) unbiasGuassian (fullrmc.Core.Collection.BiasedRandomFloatGenerator property) unbiasRange (fullrmc.Core.Collection.BiasedRandomFloatGenerator property) update() (fullrmc.Constraints.AngleConstraints.BondsAngleConstraint method) (fullrmc.Constraints.AtomicCoordinationConstraints.AtomicCoordinationNumberConstraint method) (fullrmc.Constraints.BondConstraints.BondConstraint method) (fullrmc.Constraints.DihedralAngleConstraints.DihedralAngleConstraint method) (fullrmc.Constraints.DistanceConstraints.DistanceConstraint method) (fullrmc.Constraints.ImproperAngleConstraints.ImproperAngleConstraint method) (fullrmc.Constraints.PairDistributionConstraints.PairDistributionConstraint method) (fullrmc.Constraints.StructureFactorConstraints.StructureFactorConstraint method) (fullrmc.Core.Constraint.Constraint method) (fullrmc.Core.Group.Group method) (fullrmc.Core.GroupSelector.GroupSelector method) (fullrmc.Core.MoveGenerator.MoveGenerator method) (fullrmc.Generators.Agitations.AngleAgitationGenerator method) (fullrmc.Generators.Agitations.DistanceAgitationGenerator method) (fullrmc.Generators.Neighbours.NeighboursGeneratorBase method) (fullrmc.Generators.Neighbours.TranslationTowardsNeighboursGenerator method) (fullrmc.Generators.Removes.AtomsRemoveGenerator method) (fullrmc.Generators.Rotations.OrientationGenerator method) (fullrmc.Generators.Rotations.RotationAboutAxisGenerator method) (fullrmc.Generators.Rotations.RotationAboutSymmetryAxisGenerator method) (fullrmc.Generators.Rotations.RotationAboutSymmetryAxisPath method) (fullrmc.Generators.Rotations.RotationGenerator method) (fullrmc.Generators.Rotations.RotationRandomGenerator method) (fullrmc.Generators.Swaps.SwapCentersGenerator method) (fullrmc.Generators.Swaps.SwapPositionsGenerator method) (fullrmc.Generators.Translations.TranslationAlongAxisGenerator method) (fullrmc.Generators.Translations.TranslationAlongSymmetryAxisGenerator method) (fullrmc.Generators.Translations.TranslationAlongSymmetryAxisPath method) (fullrmc.Generators.Translations.TranslationGenerator method) (fullrmc.Generators.Translations.TranslationRandomGenerator method) (fullrmc.Generators.Translations.TranslationTowardsAxisGenerator method) (fullrmc.Generators.Translations.TranslationTowardsCenterGenerator method) (fullrmc.Generators.Translations.TranslationTowardsSymmetryAxisGenerator method) (fullrmc.Generators.Volumes.CylinderVolumeGenerator method) (fullrmc.Generators.Walks.WalkGenerator method) (fullrmc.Selectors.OrderedSelectors.DefinedOrderSelector method) (fullrmc.Selectors.OrderedSelectors.DirectionalOrderSelector method) (fullrmc.Selectors.RandomSelectors.SmartRandomSelector method) (fullrmc.Selectors.RandomSelectors.WeightedRandomSelector method)

update_code() (fullrmc.OptimizationEngine.ChainedAtomsOptimizerGenerator method) update_neighbours() (fullrmc.Generators.Neighbours.NeighboursGeneratorBase method) update_standard_error() (fullrmc.Constraints.PairCorrelationConstraints.PairCorrelationConstraint method) (fullrmc.Constraints.PairDistributionConstraints.PairDistributionConstraint method) (fullrmc.Constraints.RadialDistributionConstraints.RadialDistributionConstraint method) (fullrmc.Constraints.StructureFactorConstraints.StructureFactorConstraint method) (fullrmc.Core.Constraint.Constraint method) update_total_standard_error() (fullrmc.Engine.Engine method) updateFrequency (fullrmc.Generators.Neighbours.NeighboursGeneratorBase property) upperLimit (fullrmc.Core.Collection.RandomFloatGenerator property) (fullrmc.Core.Collection.RandomIntegerGenerator property) upperShells (fullrmc.Constraints.AtomicCoordinationConstraints.AtomicCoordinationNumberConstraint property) use_frame() (fullrmc.Engine.Engine method) used (fullrmc.Core.Constraint.Constraint property) usedFrame (fullrmc.Core.Constraint.Constraint property) (fullrmc.Engine.Engine property)

V

variance (fullrmc.Core.Constraint.Constraint property) version (fullrmc.Engine.Engine property)

visualize() (fullrmc.Engine.Engine method) volume (fullrmc.Engine.Engine property) VolumeGenerator (class in fullrmc.Generators.Volumes)

W

WalkGenerator (class in fullrmc.Generators.Walks) WeightedRandomSelector (class in fullrmc.Selectors.RandomSelectors) weighting (fullrmc.Core.Constraint.AtomsPairWeighting property) weightingScheme (fullrmc.Core.Constraint.AtomsPairWeighting property) weights (fullrmc.Constraints.AtomicCoordinationConstraints.AtomicCoordinationNumberConstraint property) (fullrmc.Core.Collection.BiasedRandomFloatGenerator property) (fullrmc.Core.Collection.BiasedRandomIntegerGenerator property) (fullrmc.Selectors.RandomSelectors.WeightedRandomSelector property) willExplore (fullrmc.Core.GroupSelector.GroupSelector property) (fullrmc.Core.GroupSelector.RecursiveGroupSelector property)

willRecur (fullrmc.Core.GroupSelector.GroupSelector property) (fullrmc.Core.GroupSelector.RecursiveGroupSelector property) willRefine (fullrmc.Core.GroupSelector.GroupSelector property) (fullrmc.Core.GroupSelector.RecursiveGroupSelector property) willSelect (fullrmc.Core.GroupSelector.GroupSelector property) (fullrmc.Core.GroupSelector.RecursiveGroupSelector property) windowArray (fullrmc.Constraints.PairDistributionConstraints.PairDistributionConstraint property) (fullrmc.Constraints.StructureFactorConstraints.StructureFactorConstraint property) windowFunction (fullrmc.Constraints.PairDistributionConstraints.PairDistributionConstraint property) (fullrmc.Constraints.StructureFactorConstraints.StructureFactorConstraint property)